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Clone Read LE_HBa0032O20_SP6_140859

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0032O20_SP6_140859
Primer
SP6
ID from Seq. Facility
LE_HBa_032_O20-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
430 trimmed for vector and quality, 881 raw
Genbank Accession
DU042110
Sequence
>LE_HBa0032O20_SP6_140859 (raw untrimmed)
TTTCCAAACGGGGGCCCGACGCGCGGGCTCCTCCATGCCCTGCTGCCTGTTTGAGTAAGAAGGGTTAACCCCCCGTATATTTGGCTCCATCCTCCTACCT
ATTCATAGAATGACGCCAAGATACAAACGAAAGAATGAATTTTTTGATACTTGACAGGAAAAGATGCAAAGGTTGCCAAGAGGAAAACAGTTTGCATTGT
CCCTTTATGACTCACCTTTGTATTGTCATACCAAGGGTACCAGTTTGTGATAGTTGGGAGCTTCAATGCATCTATAGAATATCGAGTTGCGGTTAAAGGA
ACAACTGAATCAGTATCGCCACTGCTAAGGATGTTAGATGATCGGAAAATCAGATTCTGATTAAGATAAGCTGAAAAAGGTAAACATTATCAAAGTTGTC
TGTGCTAATGAGTCATCTCTGCATAAACCGTGATGATTCAAGATGACACAAACATATCAGTTCATCCTACGACTTAGTTGGAAGTAAAGATACAATATGA
GGACGTTTCCAGCTCCCCTTTCATACTTGATATTCTTCATTTGAAAAGCCAAATGAATGTTGCCAGGCAAAATCATCTATACTTAATGAGTAAAGATGGA
AAAAGTACTGCATGCAATTATAGCTCCTACACTCCTAAAGAAAAAAGAAGAGTTAATTTTGCAGTGATGGACGTATATTAGTGCACAACCGTCCCCGAAA
AAGAAGGTAATGAATGCCACAACACCCCAGCAATTTTATACAAAAACCCCGGTTAGTAACCCTACCGGCCCCGAAATAAATCGTAGTTTGAAGTACGAGA
AATAACATTAACTTAGTATAAAACCCAAGAAAAGGAAAACCGACAGGGTTCAGTTAGTTTTAGGTCTTTTCCACTGCCCTT
>LE_HBa0032O20_SP6_140859 (trimmed for quality and cloning vector)
ACGAAAGAATGAATTTTTTGATACTTGACAGGAAAAGATGCAAAGGTTGCCAAGAGGAAAACAGTTTGCATTGTCCCTTTATGACTCACCTTTGTATTGT
CATACCAAGGGTACCAGTTTGTGATAGTTGGGAGCTTCAATGCATCTATAGAATATCGAGTTGCGGTTAAAGGAACAACTGAATCAGTATCGCCACTGCT
AAGGATGTTAGATGATCGGAAAATCAGATTCTGATTAAGATAAGCTGAAAAAGGTAAACATTATCAAAGTTGTCTGTGCTAATGAGTCATCTCTGCATAA
ACCGTGATGATTCAAGATGACACAAACATATCAGTTCATCCTACGACTTAGTTGGAAGTAAAGATACAATATGAGGACGTTTCCAGCTCCCCTTTCATAC
TTGATATTCTTCATTTGAAAAGCCAAATGA

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.954991
Expected error %
1.394
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g07990.1 Score 73 E Value 5e-14 Identity 21.40% Align. Length 158bp (36.74%) Frame 1
68416.m00976 serine carboxypeptidase S10 family protein similar to serine carboxypeptidase II (CP-MII) GB:CAA70815 [Hordeum vulgare]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAD73778.1| Score 74 E Value 2e-12 Identity 21.40% Align. Length 158bp (36.74%) Frame 1
putative serine carboxypeptidase II [Oryza sativa (japonica cultivar-group)]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_915353.1| Score 74 E Value 2e-12 Identity 21.40% Align. Length 158bp (36.74%) Frame 1
putative carboxypeptidase D [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0032O20
Clone
Clone name
hba-32o20
LE_HBa0032O20
P032O20
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found