Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

Clone Read LE_HBa0031N18_SP6_140039

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0031N18_SP6_140039
Primer
SP6
ID from Seq. Facility
LE_HBa_031_N18-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
691 trimmed for vector and quality, 922 raw
Genbank Accession
DU048710
Sequence
>LE_HBa0031N18_SP6_140039 (raw untrimmed)
CCTTTTTTGGATCGCATAGGTCACATCATATGTTGTATGATTCATTTCTTGCACATCAGAAGTAGAAACTGAACTTTTCTTTAAATAAGTTGTAATTGAC
TTTAAGATGATATGATATATGAAGTGAAGATTGTATTTTGGAAGTATAAGCGCAGGACTCTTTGCAAATATATGCAAGTTTTGTAGACTTTGGACATGCT
AGTTTCTGATACTCGAAGCCAAGTATCTTTAGTATAGCCACTGAGCTCTTCCCGTCAGTGCAGCTCTTTTTACTCATTTTAACATGGAGGCTATATGCAG
CTAATATTGAATGACCCATTCCTTGGAAAAAGAGCTGAAGAGGGCAGTTTCTCCTCTGTGCCATTGAGAGATGAATTCCTTGAAAATGCTCGTCTTTTTA
TCTCTGAGACCTACTGCCGCATTCACCAACGCATTGACATGGGGTATGTAGCTAATTCTTCAAAGTTACTTTCTAAATCTATTTTGGGGTTCCTTCCCAC
TCCCCTTGCCCATAGTTTTTTGTAATATTAGGTATACCCCTTTTGTTTGTTACCTGTTGAGAGGGCTTAAGAAAGCAGAGTTGTGCCCATTTAATAACCA
TTTTCTTTCATTTCATAAATGTCAGGGTTCTAGCTGAGAAGCTTAACTTGAACCTTGAGGAGGCAGAGCGATGGATGGTGAATCTTATCAGGACCTCAAA
GCTTGATGCCAAGATAGACACTGAAACCGGGACAGTTTACATGGAACCAAATCAGCCTAATGTGTAAGTTTATATACAGATGTTACCTATCGAAATGTTC
AATGCGTTGACCCATTTTAGCATACCCTGATGTTTATGAGCATGGTCTGTTCAGGTCGAGCAGCCTCTCCATTCCACCAGCCCTTTCTGGACCCCGTACA
ATTATGCATCAGCTCCTGGACT
>LE_HBa0031N18_SP6_140039 (trimmed for quality and cloning vector)
TTGTATGATTCATTTCTTGCACATCAGAAGTAGAAACTGAACTTTTCTTTAAATAAGTTGTAATTGACTTTAAGATGATATGATATATGAAGTGAAGATT
GTATTTTGGAAGTATAAGCGCAGGACTCTTTGCAAATATATGCAAGTTTTGTAGACTTTGGACATGCTAGTTTCTGATACTCGAAGCCAAGTATCTTTAG
TATAGCCACTGAGCTCTTCCCGTCAGTGCAGCTCTTTTTACTCATTTTAACATGGAGGCTATATGCAGCTAATATTGAATGACCCATTCCTTGGAAAAAG
AGCTGAAGAGGGCAGTTTCTCCTCTGTGCCATTGAGAGATGAATTCCTTGAAAATGCTCGTCTTTTTATCTCTGAGACCTACTGCCGCATTCACCAACGC
ATTGACATGGGGTATGTAGCTAATTCTTCAAAGTTACTTTCTAAATCTATTTTGGGGTTCCTTCCCACTCCCCTTGCCCATAGTTTTTTGTAATATTAGG
TATACCCCTTTTGTTTGTTACCTGTTGAGAGGGCTTAAGAAAGCAGAGTTGTGCCCATTTAATAACCATTTTCTTTCATTTCATAAATGTCAGGGTTCTA
GCTGAGAAGCTTAACTTGAACCTTGAGGAGGCAGAGCGATGGATGGTGAATCTTATCAGGACCTCAAAGCTTGATGCCAAGATAGACACTG

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.966154
Expected error %
0.305
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g57290.1 Score 92 E Value 3e-19 Identity 24.00% Align. Length 170bp (24.60%) Frame 3
68416.m06377 eukaryotic translation initiation factor 3E / eIF3e (TIF3E1) identical to eukaryotic initiation factor 3E subunit [Arabidopsis thaliana] gi|12407658|gb|AAG53613
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAB68135.1| Score 92 E Value 1e-17 Identity 24.00% Align. Length 170bp (24.60%) Frame 3
translation initiation factor 3-like protein [Arabidopsis thaliana] pir||T45807 translation initiation factor 3-like protein - Arabidopsis thaliana
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAL85088.1| Score 92 E Value 1e-17 Identity 24.00% Align. Length 170bp (24.60%) Frame 3
putative translation initiation factor 3 [Arabidopsis thaliana] gb|AAK64017.1| putative translation initiation factor 3 [Arabidopsis thaliana] gb|AAG53613.1| eukaryotic initiation factor 3E subunit [Arabidopsis thaliana] ref|NP_567047.1| eukaryotic translation initiation factor 3E / eIF3e (TIF3E1) [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0031N18
Clone
Clone name
hba-31n18
LE_HBa0031N18
P031N18
Clone type
BAC
Contamination
none
Estimated length
82,407
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found