Clone Read LE_HBa0031L11_T7_139930

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0031L11_T7_139930
Primer
T7
ID from Seq. Facility
LE_HBa_031_L11-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
821 trimmed for vector and quality, 965 raw
Genbank Accession
DU048605
Sequence
>LE_HBa0031L11_T7_139930 (raw untrimmed)
ACCAACTGGGCCCCCGGGGGATCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGTACCAAATAAATCCTTCAAATAAAAAATAAGAGAGATATGCCTCTA
TCCCTATCATTATACTATAGTTGATGTAAGTATTAAAGTTGTACTCCTGTTTGTTGGTTGAAGCCTCTGACAGATAGAACCATAACAAAATAATTAAAAA
ACCCACACTTTGTTCACATGTACATCACATTGACACATAATTCCAAATTAACTATTCTTTTCTCCCAACTTTTGTCTCCTTCCATGATATTTTGCATATA
TAAAACAACCAGCTTAAAGAATGATTCATGAACATAACCTGTTTTGTAAAAGGAAAAAAAAAATGAACCTTTCAACAATTCGAACAATGGCTGCTCTTTC
CCCAAGGTCTCATTCTCATAACTCTTACCGTACCCGTTGTGTTAGTTTTCCTGCTAGATCACACCCCAGCACAATCAAGATTGAGCAAGTTTTGAACAAA
ATCAAAACTTGGGAATCATCTTCTCCTTTATCTCCAAAAGCAGAAGAAAAAACCCAAAATGCCCTGTCAAGCGGCCTTGTAGAATTGTACGAGTGTATAG
AGGAACTCCTTGCGTTGCCAATGACTCAGAGGGCGCTTCTCCAGCATCAAGATGACAATTTTGTGAAGGAATTGCTGGAAAGATCAGTGAGATTCATAGA
TATCTGTAGCAATACAAGGGATACCGTTATGTGTTTGAAAGAAAGCGTGAGAGAACTACAATCCGCGCTTCGAAGAAGCAAAACTGGAGATGATTTATTG
ACTATTGAGGGTAGTGGTAGTGCTTATATTTTCTTCAAAAAAAACGCTTCAAAGGAAATTGAAAATCCCCTACTATACTGAACAGATACCTAACCCCCAT
CACCCAAATGAAAACTCTCCAGCTCTCCTGCATAAAAAAGTTCTTGAAGAGCCATTTTCCAACTT
>LE_HBa0031L11_T7_139930 (trimmed for quality and cloning vector)
AGCTTGTACCAAATAAATCCTTCAAATAAAAAATAAGAGAGATATGCCTCTATCCCTATCATTATACTATAGTTGATGTAAGTATTAAAGTTGTACTCCT
GTTTGTTGGTTGAAGCCTCTGACAGATAGAACCATAACAAAATAATTAAAAAACCCACACTTTGTTCACATGTACATCACATTGACACATAATTCCAAAT
TAACTATTCTTTTCTCCCAACTTTTGTCTCCTTCCATGATATTTTGCATATATAAAACAACCAGCTTAAAGAATGATTCATGAACATAACCTGTTTTGTA
AAAGGAAAAAAAAAATGAACCTTTCAACAATTCGAACAATGGCTGCTCTTTCCCCAAGGTCTCATTCTCATAACTCTTACCGTACCCGTTGTGTTAGTTT
TCCTGCTAGATCACACCCCAGCACAATCAAGATTGAGCAAGTTTTGAACAAAATCAAAACTTGGGAATCATCTTCTCCTTTATCTCCAAAAGCAGAAGAA
AAAACCCAAAATGCCCTGTCAAGCGGCCTTGTAGAATTGTACGAGTGTATAGAGGAACTCCTTGCGTTGCCAATGACTCAGAGGGCGCTTCTCCAGCATC
AAGATGACAATTTTGTGAAGGAATTGCTGGAAAGATCAGTGAGATTCATAGATATCTGTAGCAATACAAGGGATACCGTTATGTGTTTGAAAGAAAGCGT
GAGAGAACTACAATCCGCGCTTCGAAGAAGCAAAACTGGAGATGATTTATTGACTATTGAGGGTAGTGGTAGTGCTTATATTTTCTTCAAAAAAAACGCT
TCAAAGGAAATTGAAAATCCC

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.960609
Expected error %
0.7078
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g35720.1 Score 106 E Value 2e-23 Identity 13.80% Align. Length 476bp (57.98%) Frame 1
68417.m05069 expressed protein contains Pfam profile PF03087: Arabidopsis protein of unknown function
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g35690.1 Score 95 E Value 4e-20 Identity 13.70% Align. Length 422bp (51.40%) Frame 1
68417.m05066 hypothetical protein contains Pfam profile PF03087: Arabidopsis protein of unknown function
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAK01735.1| Score 132 E Value 9e-30 Identity 15.50% Align. Length 470bp (57.25%) Frame 1
hypothetical protein [Glycine max]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAB80288.1| Score 106 E Value 9e-22 Identity 13.80% Align. Length 476bp (57.98%) Frame 1
putative protein [Arabidopsis thaliana] emb|CAA20042.1| putative protein [Arabidopsis thaliana] ref|NP_195297.1| expressed protein [Arabidopsis thaliana] pir||T04677 hypothetical protein F8D20.230 - Arabidopsis thaliana
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0031L11
Clone
Clone name
hba-31l11
LE_HBa0031L11
C02HBa0031L11
P031L11
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found