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Clone Read LE_HBa0031D20_T7_139564

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0031D20_T7_139564
Primer
T7
ID from Seq. Facility
LE_HBa_031_D20-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
847 trimmed for vector and quality, 910 raw
Genbank Accession
DU048272
Sequence
>LE_HBa0031D20_T7_139564 (raw untrimmed)
CACACCCTGGTACCCGGGGGACCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGAACTCAAACGAAGAGCTTTTGATTGAGCTTGTGGCCCTTGAAAAAT
TGAAAGAGAATGCTGAACAAGCTGAAAAGACTGAGGACGTTGAATATATTGAGCAAATGATAACTCTTGTTTCTCATATGCACGATTGCTTTGTCACTGT
AAAACAGTCCCAGAGCTGTACCACTGTGTCAATACCTCCCGACTTTTGCTGCCCTCTTTCACTTGAGTTGATGACTGACCCTGTAATTGTTGCATCTGGT
CAAACCTATGAGAGGGCTTTTATAAGGAGATGGATTGATCTGGGTCTCACTGTTTGCCCCAAGACACGGCAAACTCTGGGGCATACAAATCTCATTCCCA
ATTACACTGTTAAGGCACTTATTGCAAACTGGTGTGAGATAAATGATGTGAAGTTGCCTGATCCCATGATATCTTTGAGCTTGAACCAACCATCTTCCCT
CATAACACATGCAGACTCTGGTGCATCCAGGGATAACCATGTATTTCCCCTTACAAGGGACAAACACTCCTTGTCACCAGACTCCACACAATCTTTAGGT
TCTCCGAGAAAGACTTTGATTTTGTCAAGTGTAAACCAAAGAGAGGAATCATCTCCATCTCATCTCCGTTCCTCTTCAGAGGATTCTTTACCTGGAGTTG
CTGGTAATATACATGCTTTTGATGTTGAAAGGATAATTATGAAGAGTGAAGACCGGATGGGCCACTCTGGAGAGATAAGCTCACATGGTCATAGTACATT
AGCTGTTGATGAACATTATCTTCAGGTCATAATAGAACAACTTCGGCACCCAGCACGCTTGCTAATTCAAACTTTTCCCCTGGAATCCCAGTGATGGAAA
AAGTTGTCCC
>LE_HBa0031D20_T7_139564 (trimmed for quality and cloning vector)
AGCTTGAACTCAAACGAAGAGCTTTTGATTGAGCTTGTGGCCCTTGAAAAATTGAAAGAGAATGCTGAACAAGCTGAAAAGACTGAGGACGTTGAATATA
TTGAGCAAATGATAACTCTTGTTTCTCATATGCACGATTGCTTTGTCACTGTAAAACAGTCCCAGAGCTGTACCACTGTGTCAATACCTCCCGACTTTTG
CTGCCCTCTTTCACTTGAGTTGATGACTGACCCTGTAATTGTTGCATCTGGTCAAACCTATGAGAGGGCTTTTATAAGGAGATGGATTGATCTGGGTCTC
ACTGTTTGCCCCAAGACACGGCAAACTCTGGGGCATACAAATCTCATTCCCAATTACACTGTTAAGGCACTTATTGCAAACTGGTGTGAGATAAATGATG
TGAAGTTGCCTGATCCCATGATATCTTTGAGCTTGAACCAACCATCTTCCCTCATAACACATGCAGACTCTGGTGCATCCAGGGATAACCATGTATTTCC
CCTTACAAGGGACAAACACTCCTTGTCACCAGACTCCACACAATCTTTAGGTTCTCCGAGAAAGACTTTGATTTTGTCAAGTGTAAACCAAAGAGAGGAA
TCATCTCCATCTCATCTCCGTTCCTCTTCAGAGGATTCTTTACCTGGAGTTGCTGGTAATATACATGCTTTTGATGTTGAAAGGATAATTATGAAGAGTG
AAGACCGGATGGGCCACTCTGGAGAGATAAGCTCACATGGTCATAGTACATTAGCTGTTGATGAACATTATCTTCAGGTCATAATAGAACAACTTCGGCA
CCCAGCACGCTTGCTAATTCAAACTTTTCCCCTGGAATCCCAGTGAT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.974947
Expected error %
0.9468
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g23140.1 Score 199 E Value 2e-51 Identity 16.80% Align. Length 647bp (76.39%) Frame 2
68415.m02763 armadillo/beta-catenin repeat family protein / U-box domain-containing protein contains Pfam domain, PF00514: Armadillo/beta-catenin-like repeats and Pfam, PF04564: U-box domain
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g67340.1 Score 160 E Value 1e-39 Identity 16.30% Align. Length 452bp (53.36%) Frame 2
68418.m08492 armadillo/beta-catenin repeat family protein / U-box domain-containing protein contains Pfam domain, PF00514: Armadillo/beta-catenin-like repeats and Pfam, PF04564: U-box domain
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAO61490.1| Score 318 E Value 2e-92 Identity 68.60% Align. Length 805bp (95.04%) Frame 2
arm repeat-containing protein [Nicotiana tabacum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_179895.2| Score 199 E Value 8e-50 Identity 16.80% Align. Length 647bp (76.39%) Frame 2
armadillo/beta-catenin repeat family protein / U-box domain-containing protein [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0031D20
Clone
Clone name
hba-31d20
LE_HBa0031D20
P031D20
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found