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Clone Read LE_HBa0031D09_SP6_139541

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0031D09_SP6_139541
Primer
SP6
ID from Seq. Facility
LE_HBa_031_D09-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
760 trimmed for vector and quality, 961 raw
Genbank Accession
DU048251
Sequence
>LE_HBa0031D09_SP6_139541 (raw untrimmed)
GGGCACTAGAGGGGTTCCCTTTAGTCTATCATCTCAAATNAGAGGTCCTCAGTTTACCTCTCATTTCTGGAAGTCATTTCAGAAAGGTCTTGGTACTCAA
ATTAACCTTAGTACAATAATTAATCCACAGACGGATGGGCAGGCAGAGCTACCATTCAGACCTTAGAGGATATGTTGAGAGCTTGTGTAATCGATTTCAA
AGGTAGTTGTCATGATTACCTTCCTCTTATTGAGTTTGCCTACAATAATAGCTATTATTCCAGTAATCAGATGGCCCCTTATGAGGCTTTATATGGGTGT
AGATGTAGATCTTCTGTTGGTTGATTTAAAATAGGTGAAACAGCTTTGATAGGGGTAGATTCAGTCATTTATGCTATGGAGAAAGTGCAACTCATTGGAG
ATAGATTTAAGACAGACCAAAGTCGTCAGAAATCCTATGCAGATGTAAGGAGAAAAGATATAGAGTTCCAAGTTGATGATTGGGTTTTTCTGAAAGTTTC
ACCTATGAAAGGGGTGATGAGATTTGGAAAGAAAGAGAAGCTCAGTCCTAGATATGTAGGCCCTTACAAGATCTTGAAAAGGATTGGCAAGGTGGCATAT
GAGTTAGAGTTGACAGCAGAATTAGCAGCAGTGCATCCGATCTTCCACATCTCACTCTTGAAGAAGTGTGTGGATGACCCAGCCTCTATAGTGCCATTAG
AGAGTATGGTGGTGAAAGAAAGTCTTTCTTATGAGGATGTACCAGTTGAGATTCTTGATCATCAGGTTAGAAGGTTGAGAAATAAAAAAGTCGCTTCAGT
CAAGGTTTTGTGGAGGAGTCAATCCGTAGAGGGAGCTACTTGGGAAGCAGAAGCGCCCTGAAAAGCCAATATCCTCCCTTCTTTCTTTCCATTTCCCTCC
TACTTGAAATAATAGCCTGTTAATTTTCAGTCCTTCTGCGTGAATTCCGCCTTAAACCTTC
>LE_HBa0031D09_SP6_139541 (trimmed for quality and cloning vector)
AGGTCCTCAGTTTACCTCTCATTTCTGGAAGTCATTTCAGAAAGGTCTTGGTACTCAAATTAACCTTAGTACAATAATTAATCCACAGACGGATGGGCAG
GCAGAGCTACCATTCAGACCTTAGAGGATATGTTGAGAGCTTGTGTAATCGATTTCAAAGGTAGTTGTCATGATTACCTTCCTCTTATTGAGTTTGCCTA
CAATAATAGCTATTATTCCAGTAATCAGATGGCCCCTTATGAGGCTTTATATGGGTGTAGATGTAGATCTTCTGTTGGTTGATTTAAAATAGGTGAAACA
GCTTTGATAGGGGTAGATTCAGTCATTTATGCTATGGAGAAAGTGCAACTCATTGGAGATAGATTTAAGACAGACCAAAGTCGTCAGAAATCCTATGCAG
ATGTAAGGAGAAAAGATATAGAGTTCCAAGTTGATGATTGGGTTTTTCTGAAAGTTTCACCTATGAAAGGGGTGATGAGATTTGGAAAGAAAGAGAAGCT
CAGTCCTAGATATGTAGGCCCTTACAAGATCTTGAAAAGGATTGGCAAGGTGGCATATGAGTTAGAGTTGACAGCAGAATTAGCAGCAGTGCATCCGATC
TTCCACATCTCACTCTTGAAGAAGTGTGTGGATGACCCAGCCTCTATAGTGCCATTAGAGAGTATGGTGGTGAAAGAAAGTCTTTCTTATGAGGATGTAC
CAGTTGAGATTCTTGATCATCAGGTTAGAAGGTTGAGAAATAAAAAAGTCGCTTCAGTCA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.953536
Expected error %
0.2604
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38724.1| Score 314 E Value 2e-95 Identity 69.30% Align. Length 757bp (99.61%) Frame 3
putative retrotransposon protein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38792.1| Score 309 E Value 6e-88 Identity 68.90% Align. Length 718bp (94.47%) Frame 3
putative gag-pol polyprotein [Solanum demissum] gb|AAT38791.1| putative gag-pol polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0031D09
Clone
Clone name
hba-31d9
LE_HBa0031D09
C08HBa0031D09
P031D09
Clone type
BAC
Contamination
none
Estimated length
61,371
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found