Clone Read LE_HBa0031A22_SP6_139423

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0031A22_SP6_139423
Primer
SP6
ID from Seq. Facility
LE_HBa_031_A22-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
721 trimmed for vector and quality, 902 raw
Genbank Accession
DU048146
Sequence
>LE_HBa0031A22_SP6_139423 (raw untrimmed)
TGTGGGTACCATCTTCGAAGTTTTGGAAGCAGCGTGGGGGGAGGTAGCTTATGAATTAGCTTTACCCCCAGGACTGTCAGAAGTGCACCCGGTATTTCAT
GTGTCTATGCTGAAAAGATACCGTGAGTGATGGAAACTATATCATTCGTTGGGATTCAGTCCTTCTTCATGAGAATTTGTCTTATGAGGAGGAGCCTGTT
GCCATTTTGGATAGAGAAGTCCGCAAGTTCAGATCAAGGGAGATTGCATCCATCGAAGTTCAATGGAAGAATCGACCCGTTAAAGAGTACACTTGGGAGA
AGGAGGCCGATATGCAAGAAAGATATCCACACCTTTTTACAAACTCAGGTACTCCTTTTCGTCCTTGTTTTTCTTCTTGTGATCGTTCGAGGACGAACGA
TGGGTAAATTGGTATCTATTGTAACGACCTGTTAGTCGTTTTGAGCAGTAGAGTTTATTTTCTGATAATAACTGTCTGAGTCGACGGATCCCATGATGGA
CCGTCATGGGCACGACGGACCGTCGAGGGGGTCTCGTTCCTAAACACTTGGATTCTGGAAATTTGGATACTGAGAACAACTCTCTGAACTTCGCGACGAC
ATGGCAGGACGGACCGTCGTAGGCACGACTAACCGTCACAGACCCTTAGTGAAATTTAGTCTCTGAACTTTGTGACGGAAGCAGCCAGACGGACCGTCGC
AGGCACGACGGACCGTCACAGGCTGCATAACCCTGACTGGATCGGCTTCTCTTAAATGTTTGAAGGGGCGTTTTAGACTATTCCTGCTTATAATTATAAA
GTTAGTGGTTGAAGGTTAATAATTCAATTACTTGGGGGGTAAAAGGGAAAACCGTGAATTAATTAGTGGGTTAACTTGGGCCTCTTTGTACCTAATTTGT
GG
>LE_HBa0031A22_SP6_139423 (trimmed for quality and cloning vector)
GGGAGGTAGCTTATGAATTAGCTTTACCCCCAGGACTGTCAGAAGTGCACCCGGTATTTCATGTGTCTATGCTGAAAAGATACCGTGAGTGATGGAAACT
ATATCATTCGTTGGGATTCAGTCCTTCTTCATGAGAATTTGTCTTATGAGGAGGAGCCTGTTGCCATTTTGGATAGAGAAGTCCGCAAGTTCAGATCAAG
GGAGATTGCATCCATCGAAGTTCAATGGAAGAATCGACCCGTTAAAGAGTACACTTGGGAGAAGGAGGCCGATATGCAAGAAAGATATCCACACCTTTTT
ACAAACTCAGGTACTCCTTTTCGTCCTTGTTTTTCTTCTTGTGATCGTTCGAGGACGAACGATGGGTAAATTGGTATCTATTGTAACGACCTGTTAGTCG
TTTTGAGCAGTAGAGTTTATTTTCTGATAATAACTGTCTGAGTCGACGGATCCCATGATGGACCGTCATGGGCACGACGGACCGTCGAGGGGGTCTCGTT
CCTAAACACTTGGATTCTGGAAATTTGGATACTGAGAACAACTCTCTGAACTTCGCGACGACATGGCAGGACGGACCGTCGTAGGCACGACTAACCGTCA
CAGACCCTTAGTGAAATTTAGTCTCTGAACTTTGTGACGGAAGCAGCCAGACGGACCGTCGCAGGCACGACGGACCGTCACAGGCTGCATAACCCTGACT
GGATCGGCTTCTCTTAAATGT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.987053
Expected error %
0.3992
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38742.1| Score 101 E Value 2e-20 Identity 19.90% Align. Length 230bp (31.90%) Frame 2
hypothetical protein PGEC093P17.31 [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38724.1| Score 92 E Value 2e-17 Identity 15.10% Align. Length 284bp (39.39%) Frame 2
putative retrotransposon protein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0031A22
Clone
Clone name
hba-31a22
LE_HBa0031A22
P031A22
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found