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Clone Read LE_HBa0030O17_T7_139318

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0030O17_T7_139318
Primer
T7
ID from Seq. Facility
LE_HBa_030_O17-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
709 trimmed for vector and quality, 837 raw
Genbank Accession
DU042790
Sequence
>LE_HBa0030O17_T7_139318 (raw untrimmed)
GCTGGGTCCCGGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTCGTAGCAACAGGCTAGCTGCCATTTTAGCGCTTCTCCAGACAATCGTGGCC
TGATGCCCAACAGTTTGTGGTAAATCTGATTACTAGTCTGTAGATTATATAGTTTTGGTCCTTTAAGCCATTTTCATTGATGAACGAGAAGGGCTTAGAT
TAAATCTTGTGCTCTAAATTCGACATGACTTCATTGAGACGATATAATTAGTAACTGACAACCTCTTGTCCTTTATCTCTTTCATTCTTTTGTTGCTTTA
GTGTGATCTCTGTTAGCCTTCATTAAGAAGGGGACTCTACAAATACCACTTCCACCCCAGTTTCCTATATTGTCATTTGGTTTCTAGTTCCCAAAACACT
CGGTATCAGTTAATGCCATGTTTTAAATACAATTAGTTTGTAAAACGTTGTGTATATGCATGCAAGTTACAAGTAAGATGTAGAACTCCAATATTCAGAA
TATCTTTGTTTGTTCATTCAGTTGTCTCTATATTCTTTTGGTTTAGTCCTACTCATGTACTGCAGGCAGAGGCAGCTGGAGTTGGCAAGGTTCGGCATAA
GAGATTGGTGAATCTAATTGGCTGTTGTGCAGAGGGAGATGAGCGCCTATTGGTTGCAGAATACATGCCTAATGATACTCTCTCGAAGCATCTCTTCCAC
TGTATGGTTTAAGTCTTTTGCCTGGTCCAAAAATTTTGAATGTTGAATTGAAAAAAGGAGAACCATTTTTTGTGGTATTTCAATAGTGCGATTCCGGTTT
TTTCCGGCGAACTTTATTGGGTGAAGGATTTTTATAA
>LE_HBa0030O17_T7_139318 (trimmed for quality and cloning vector)
AGCTTCGTAGCAACAGGCTAGCTGCCATTTTAGCGCTTCTCCAGACAATCGTGGCCTGATGCCCAACAGTTTGTGGTAAATCTGATTACTAGTCTGTAGA
TTATATAGTTTTGGTCCTTTAAGCCATTTTCATTGATGAACGAGAAGGGCTTAGATTAAATCTTGTGCTCTAAATTCGACATGACTTCATTGAGACGATA
TAATTAGTAACTGACAACCTCTTGTCCTTTATCTCTTTCATTCTTTTGTTGCTTTAGTGTGATCTCTGTTAGCCTTCATTAAGAAGGGGACTCTACAAAT
ACCACTTCCACCCCAGTTTCCTATATTGTCATTTGGTTTCTAGTTCCCAAAACACTCGGTATCAGTTAATGCCATGTTTTAAATACAATTAGTTTGTAAA
ACGTTGTGTATATGCATGCAAGTTACAAGTAAGATGTAGAACTCCAATATTCAGAATATCTTTGTTTGTTCATTCAGTTGTCTCTATATTCTTTTGGTTT
AGTCCTACTCATGTACTGCAGGCAGAGGCAGCTGGAGTTGGCAAGGTTCGGCATAAGAGATTGGTGAATCTAATTGGCTGTTGTGCAGAGGGAGATGAGC
GCCTATTGGTTGCAGAATACATGCCTAATGATACTCTCTCGAAGCATCTCTTCCACTGTATGGTTTAAGTCTTTTGCCTGGTCCAAAAATTTTGAATGTT
GAATTGAAA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.963409
Expected error %
0.5006
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g46570.1 Score 87 E Value 1e-17 Identity 29.50% Align. Length 131bp (18.48%) Frame 1
68418.m05734 protein kinase family protein contains protein kinase domain, Pfam:PF00069
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g35230.1 Score 78 E Value 4e-15 Identity 22.80% Align. Length 161bp (22.71%) Frame 1
68417.m05007 protein kinase family protein contains protein kinase domain, Pfam:PF00069
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAP55105.1| Score 98 E Value 2e-19 Identity 29.60% Align. Length 161bp (22.71%) Frame 1
putative protein kinase [Oryza sativa (japonica cultivar-group)] ref|NP_922818.1| putative protein kinase [Oryza sativa (japonica cultivar-group)] gb|AAL86491.1| putative protein kinase [Oryza sativa (japonica cultivar-group)]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAU90064.1| Score 87 E Value 5e-16 Identity 29.50% Align. Length 131bp (18.48%) Frame 1
At5g46570 [Arabidopsis thaliana] dbj|BAA97528.1| protein kinase-like protein [Arabidopsis thaliana] ref|NP_199469.1| protein kinase family protein [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0030O17
Clone
Clone name
hba-30o17
LE_HBa0030O17
P030O17
Clone type
BAC
Contamination
none
Estimated length
90,087
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found