Clone Read LE_HBa0030O03_T7_139290

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0030O03_T7_139290
Primer
T7
ID from Seq. Facility
LE_HBa_030_O03-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
735 trimmed for vector and quality, 820 raw
Genbank Accession
DU042765
Sequence
>LE_HBa0030O03_T7_139290 (raw untrimmed)
GCTCGGGACCCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTATGAACAACAACTTCAAGGGGCCAATGCCTGATTGGAACAAACTTTTTG
CCCTCAAGTCATTGTACTTGTCCAATAATAACTTCTCTGGTCAGATCCCCGATGATGCCTTCAAGGGTATGATTTATCTCAAGAAACTTTATTTGGCCAA
CAACCAATTCACAGGTAACATTCCCACCTCCCTCGCTACCTCCTGCCCCAGGCTCTTCGACTTGACCCTCCAAAACAACAAATTCACTGGCTCTATACCT
GATTTCCGCGGTGGTGTTCTCAAACTCCTCAATGTATCCAACAACCAACTCGACGGTCCAATCCCTCCTTCTCTTTCATTAATGGATCCAACAGCATTCG
CAGGTACCTAATTAAATATTTTAATTGCATTGCATTACATATCGATCATTTAATCATTGCGTACATATACACAGGCAACAAAGGCATGTGTGGGAAGCCT
TTGGAATCAGTTTGCAACTCCCCAATTCCAGAAGCAAATACTACTACTCCGCCTAACACTCTCAACTCTACCATCAACACCACCCAATCTGGTGATATAG
ATAACAAGTCGCCCTCTCTCCTGAGTAGAGTGATGTTGATCGTTGCAGTTTGTTTGGTGGTCTTATGTCTCGTGATTGTCTTAATTCTTATCATTCTCCG
CCGCCGCAGCCAAAATAATCCACAACTCACCAGCCGGGCTGCAGTTGAGTCAAGTAAAATTGATGGGGATCAAAACATGACCGTTTCATCATTAGCAGCC
CTTCCTGATACCACCATGAG
>LE_HBa0030O03_T7_139290 (trimmed for quality and cloning vector)
AGCTTTATGAACAACAACTTCAAGGGGCCAATGCCTGATTGGAACAAACTTTTTGCCCTCAAGTCATTGTACTTGTCCAATAATAACTTCTCTGGTCAGA
TCCCCGATGATGCCTTCAAGGGTATGATTTATCTCAAGAAACTTTATTTGGCCAACAACCAATTCACAGGTAACATTCCCACCTCCCTCGCTACCTCCTG
CCCCAGGCTCTTCGACTTGACCCTCCAAAACAACAAATTCACTGGCTCTATACCTGATTTCCGCGGTGGTGTTCTCAAACTCCTCAATGTATCCAACAAC
CAACTCGACGGTCCAATCCCTCCTTCTCTTTCATTAATGGATCCAACAGCATTCGCAGGTACCTAATTAAATATTTTAATTGCATTGCATTACATATCGA
TCATTTAATCATTGCGTACATATACACAGGCAACAAAGGCATGTGTGGGAAGCCTTTGGAATCAGTTTGCAACTCCCCAATTCCAGAAGCAAATACTACT
ACTCCGCCTAACACTCTCAACTCTACCATCAACACCACCCAATCTGGTGATATAGATAACAAGTCGCCCTCTCTCCTGAGTAGAGTGATGTTGATCGTTG
CAGTTTGTTTGGTGGTCTTATGTCTCGTGATTGTCTTAATTCTTATCATTCTCCGCCGCCGCAGCCAAAATAATCCACAACTCACCAGCCGGGCTGCAGT
TGAGTCAAGTAAAATTGATGGGGATCAAAACATGA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.976305
Expected error %
0.3802
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g35390.1 Score 145 E Value 4e-38 Identity 61.70% Align. Length 475bp (64.63%) Frame 2
68418.m04206 leucine-rich repeat transmembrane protein kinase, putative receptor-like protein kinase PRK1, Lycopersicon esculentum, PIR:T07865
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g50610.1 Score 141 E Value 5e-35 Identity 61.70% Align. Length 475bp (64.63%) Frame 2
68414.m05685 leucine-rich repeat transmembrane protein kinase, putative similar to receptor-like protein kinase GB:AAC12254 GI:3015488 from [Lycopersicon esculentum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_198389.1| Score 145 E Value 2e-36 Identity 61.70% Align. Length 475bp (64.63%) Frame 2
leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAB11489.1| Score 145 E Value 2e-36 Identity 61.70% Align. Length 475bp (64.63%) Frame 2
receptor-like protein kinase [Arabidopsis thaliana] gb|AAC13607.1| similar to eukaryotic protein kinase domains (Pfam: pkinase.hmm, score: 72.39) [Arabidopsis thaliana] pir||T01183 hypothetical protein T26D22.9 - Arabidopsis thaliana
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0030O03
Clone
Clone name
hba-30o3
LE_HBa0030O03
C03HBa0030O03
P030O03
Clone type
BAC
Contamination
none
Estimated length
110,488
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found