Clone Read LE_HBa0169E21_SP6_13883

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0169E21_SP6_13883
Primer
SP6
ID from Seq. Facility
LE_HBa_169_E21-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
298 trimmed for vector and quality, 783 raw
Genbank Accession
DU032374
Sequence
>LE_HBa0169E21_SP6_13883 (raw untrimmed)
AAAATTAATAATCCGACCCTTTGTGGAGGATTTGTTGGGCTTCTCGTAGGAGGCAAGATCTGTCCTTTCTTGACAAGATTAAGGGAAGACAGTCTGATGA
TGAGAAACTGCGCAGAATTCAAGATAAAGTATTGCGAGGAGAGGCTAAGGAAGCACAAATCGATGAAGAAGGTGTTTTGAGAATCAAGGGAAGGGTATGT
GTACCCCGCATCGATGATTTGATCAACACTATTCTGACAGAGGCTCATAGTTCAAGGTATTCTTATACATCCGGGTGCAACCAAGATGTATCGTGACCTA
AAGCACCCCTCTTTGGTGGAGTAGAAGGAAGCGTGATATTGTTGACTTTTTTCCCCAACGTCCGAACTGTCAACAAGTAAAGTTTAATAACCAAAGGCCC
GGAGGATCACTTCATAAAATGCTCACTTCTGGATTGGAAAGTGGGAAAAATACAATTCGTATTTTGTGGTCTGGTCTCTCAAAAACAATGGCGAAAGTAC
TTACCCCTCCTGTCTGATTACTCTAATTGCTCACTCTTTTCCACCCCTCCTTTACCTCCCGCTTAAGTGACTATTTCTTATTAAACAATCTCACCATCTT
CCATCCAATTACGCCCGAACTATGTGTTATAAATACATCTCAATTCCCTCATTTTATCTTTATTTATGATTTTTGCTTTCATATACATGCATTAATCTCA
TCTTCATGATATATTATCCCTGTTTCTCATGCTTTAAACGAAATGATCTCTCTCATCGTCCATTAACTTCATTTACTACTCAT
>LE_HBa0169E21_SP6_13883 (trimmed for quality and cloning vector)
GGAGGCAAGATCTGTCCTTTCTTGACAAGATTAAGGGAAGACAGTCTGATGATGAGAAACTGCGCAGAATTCAAGATAAAGTATTGCGAGGAGAGGCTAA
GGAAGCACAAATCGATGAAGAAGGTGTTTTGAGAATCAAGGGAAGGGTATGTGTACCCCGCATCGATGATTTGATCAACACTATTCTGACAGAGGCTCAT
AGTTCAAGGTATTCTTATACATCCGGGTGCAACCAAGATGTATCGTGACCTAAAGCACCCCTCTTTGGTGGAGTAGAAGGAAGCGTGATATTGTTGAC

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.965742
Expected error %
1.06434
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38745.1| Score 76 E Value 9e-17 Identity 50.70% Align. Length 283bp (94.97%) Frame 1
putative polyprotein, 3'-partial [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT66771.1| Score 76 E Value 3e-16 Identity 48.00% Align. Length 295bp (98.99%) Frame 1
putative polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0169E21
Clone
Clone name
hba-169e21
LE_HBa0169E21
P169E21
Clone type
BAC
Contamination
none
Estimated length
114,994
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found