Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

Clone Read LE_HBa0028N20_SP6_138507

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0028N20_SP6_138507
Primer
SP6
ID from Seq. Facility
LE_HBa_028_N20-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
705 trimmed for vector and quality, 935 raw
Genbank Accession
DU047970
Sequence
>LE_HBa0028N20_SP6_138507 (raw untrimmed)
AAAGGATGGTTGGGTTTTTATTAGGGTGGTTAGCGACACATCCAAGGAATACAAGCTGTCCAATCCTTTGACAAAAAAGTTGTGACCAGCAGAGATGTCA
TTTTTTATGAAGAAAACACTTGGGAATGGAGTATGGAGAAGTCTACTCCAATTGTGTTTGATACTGGAGCCGAAGAAGTAGCTGCGATGCCTGAAAGTGC
AGAGAATTCAGCTTCTACAGCTGCTGGAATTCTACCAGCTGTTGCTGAAATTTCACCAACTGCTGAAACTGTACCAGCAACTTTAGAAGAGACTGATGCA
GCTGAACAGCCTCTTCGTCGTGCTCGCAGAAGGCCCGCATGGATGACGGATTACAAGGTAACAGGAATTGATGTTAATGAAGATGTTTCCCATTTTGCAT
TGTTTACAGATTGCGATCCTACAACTTTTGAGAATGCTGTCAAAGAGGAGAAATAGAGGAAAGCTATGGATGATGAGATTGATGCTATTGAAAGAAATGG
AACCTGGGAGTTATCAGATCTTCCGAAGGGGCAGAAAACCATTGGTGTCAAGTGGGTCTATAAGACAAAATTGAAAGAAGATGGTGAAATTGACAAGTAT
AAGGCGCGATTGGTGGCTAAGGGATACAAGCAGGAGCATGGTATGGACTACACTGAAGTGTTTGCTCCAGTCGCAAGGCATGACACCATTAGAATGGTAA
TTGCCTTGGCGGCACAAAATTCATGGCCAATCTTTCAATTGGATGTCAATCAGCTTTCCTACATGGATACTGGGAGGAAGAGGTATTTATTGAACACCTT
CTGGTATATTAAAATTGGAATGAGCATAAGGTAACAAGTTGAAAAGGGTCCTCTTGGACTAAACAAGCTCACGAGCTTGGTATATCCATTGAGGCTTATT
TCGAAAATTGGTTTCCTGAAATGGCCTTTGAGCAC
>LE_HBa0028N20_SP6_138507 (trimmed for quality and cloning vector)
TAGCGACACATCCAAGGAATACAAGCTGTCCAATCCTTTGACAAAAAAGTTGTGACCAGCAGAGATGTCATTTTTTATGAAGAAAACACTTGGGAATGGA
GTATGGAGAAGTCTACTCCAATTGTGTTTGATACTGGAGCCGAAGAAGTAGCTGCGATGCCTGAAAGTGCAGAGAATTCAGCTTCTACAGCTGCTGGAAT
TCTACCAGCTGTTGCTGAAATTTCACCAACTGCTGAAACTGTACCAGCAACTTTAGAAGAGACTGATGCAGCTGAACAGCCTCTTCGTCGTGCTCGCAGA
AGGCCCGCATGGATGACGGATTACAAGGTAACAGGAATTGATGTTAATGAAGATGTTTCCCATTTTGCATTGTTTACAGATTGCGATCCTACAACTTTTG
AGAATGCTGTCAAAGAGGAGAAATAGAGGAAAGCTATGGATGATGAGATTGATGCTATTGAAAGAAATGGAACCTGGGAGTTATCAGATCTTCCGAAGGG
GCAGAAAACCATTGGTGTCAAGTGGGTCTATAAGACAAAATTGAAAGAAGATGGTGAAATTGACAAGTATAAGGCGCGATTGGTGGCTAAGGGATACAAG
CAGGAGCATGGTATGGACTACACTGAAGTGTTTGCTCCAGTCGCAAGGCATGACACCATTAGAATGGTAATTGCCTTGGCGGCACAAAATTCATGGCCAA
TCTTT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.964984
Expected error %
0.1047
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g23160.1 Score 109 E Value 2e-24 Identity 13.40% Align. Length 461bp (65.39%) Frame 2
68417.m03342 protein kinase family protein contains Pfam domain PF00069: Protein kinase domain
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAB75932.1| Score 189 E Value 4e-47 Identity 15.10% Align. Length 662bp (93.90%) Frame 2
putative protein [Arabidopsis thaliana] pir||T47841 hypothetical protein T2O9.150 - Arabidopsis thaliana
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAG60117.1| Score 173 E Value 2e-42 Identity 40.50% Align. Length 697bp (98.87%) Frame 3
copia-type polyprotein, putative [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0028N20
Clone
Clone name
hba-28n20
LE_HBa0028N20
P028N20
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found