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Clone Read LE_HBa0169E06_T7_13846

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0169E06_T7_13846
Primer
T7
ID from Seq. Facility
LE_HBa_169_E06-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
320 trimmed for vector and quality, 806 raw
Genbank Accession
DU032349
Sequence
>LE_HBa0169E06_T7_13846 (raw untrimmed)
CCCTCCCGAATAATGCACCCATCACACAGAAGACCATAATTAGTATTTCTATCTGAAAATCATAATCACTATCAAATACAGAATCAATTGATGACCAAAC
TAAAGGAAAGACAGCGAGTCTGATAACTAGCCATTCTGCCAGAGATGAAAAAATATCTCTTTTTATAAGATGAAAGCATGGATATTTACCAGTATCACCA
GCTTGCAATTGCATATTCTGTATACAAGGGGTAACACCCTCCAAAACATACATCCGGCTGTTGTTATTGGGCCAAAATCGAAATTGAAATGTCCACTCTT
TACCCTTAATATCCTGAATCCTTATAGGTAGACCCTCTGATTGGTTAATTGGATGGAAGTATTTTTGCTTACTAATTTGTATCTATTTTTTATACATTGT
GCCGTGCTTTCTTTCCTTTCAATCTCCTTTTCCTTATCTCGTTTCCGTTTCGTGGGGTCTTCTCTTGCTTCTTTGTTTTTTTCTTCTCCTCCCTCACCTT
TTTCTCTCCTATCTCTGTTGGCAATCTCCTGTTTCGTTTTTATTTCTTTATTTCGTTCTATATTTGACAACTGCATAATCCCTCTTTGTTTCTTTTGCCT
TATTTCTTTTTCTCTTATCTTTTCTCTCTTGATTTTCTTTATCTCCTCTATAATCGTCTTTCCTTTTCCTTTCCCTACACTCTTTTCTTTCTTTCTTTTC
CTCTCACTTCCTTTATCACCTTCTCCTTCTTCCTATCTCTCCATCTATCAAATTTCTCCATTTTTTATCGTCATTCTCTTACGCTCTTCCTACCGTCTTC
TATAAA
>LE_HBa0169E06_T7_13846 (trimmed for quality and cloning vector)
ACAGAAGACCATAATTAGTATTTCTATCTGAAAATCATAATCACTATCAAATACAGAATCAATTGATGACCAAACTAAAGGAAAGACAGCGAGTCTGATA
ACTAGCCATTCTGCCAGAGATGAAAAAATATCTCTTTTTATAAGATGAAAGCATGGATATTTACCAGTATCACCAGCTTGCAATTGCATATTCTGTATAC
AAGGGGTAACACCCTCCAAAACATACATCCGGCTGTTGTTATTGGGCCAAAATCGAAATTGAAATGTCCACTCTTTACCCTTAATATCCTGAATCCTTAT
AGGTAGACCCTCTGATTGGT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.946755
Expected error %
0.287798
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g32010.1 Score 103 E Value 2e-23 Identity 30.60% Align. Length 146bp (45.62%) Frame 2
68417.m04557 transcriptional factor B3 family protein low similarity to FUSCA3 [Arabidopsis thaliana] GI:3582518, VIVIPAROUS1 protein [Triticum aestivum] GI:7801376; contains Pfam profile PF02362: B3 DNA binding domain
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g30470.1 Score 102 E Value 5e-23 Identity 27.50% Align. Length 152bp (47.50%) Frame 2
68415.m03711 transcriptional factor B3 family protein low similarity to FUSCA3 [Arabidopsis thaliana] GI:3582518; contains Pfam profile PF02362: B3 DNA binding domain
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAB79919.1| Score 103 E Value 2e-21 Identity 30.60% Align. Length 146bp (45.62%) Frame 2
predicted protein [Arabidopsis thaliana] emb|CAA16588.1| predicted protein [Arabidopsis thaliana] pir||T04644 hypothetical protein F10N7.180 - Arabidopsis thaliana
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAD90971.1| Score 103 E Value 2e-21 Identity 30.60% Align. Length 146bp (45.62%) Frame 2
transcription factor B3-EAR motif family [Arabidopsis thaliana] ref|NP_194929.2| transcriptional factor B3 family protein [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0169E06
Clone
Clone name
hba-169e6
LE_HBa0169E06
C02HBa0169E06
P169E06
Clone type
BAC
Contamination
none
Estimated length
110,080
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found