Clone Read LE_HBa0028L13_T7_138398

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0028L13_T7_138398
Primer
T7
ID from Seq. Facility
LE_HBa_028_L13-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
689 trimmed for vector and quality, 1004 raw
Genbank Accession
DU047888
Sequence
>LE_HBa0028L13_T7_138398 (raw untrimmed)
CATAATTGGGCCCGGGGGGATCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTATGTTAGCCAAGAACAAGTATGCTGATTTCTGAATTTGGAAATAGAG
TTTTTGTGGAATATTAAATTTATTTTATACTGATGGAGAAAATGATAAGTTTTGTCCTGAAAGTTTGTCCGACGTAAACTTACCTCCAAAAAAGCTATCA
ATCATAAATCAATGTTTGTCCTAGTGTTACAACCTAAGGGTCCATTAGGTTAGCTTTATTGTTGGTCAATTTTAATTCAGTGTGATACCTATTACTGATT
TTCTTATTCCATTTAGATTTAAAGAGCTGTAATTTATGATATAAACTTTGAATAATTTTGAAGTCAAGGGTTAGAACATATTGAAAGTTATATGTATCTT
CATCTGACAGTCTTATTTTAATCCATCCCGGGCTCTCTTATCCTATTTACTAAATTATCAATGTTCTGAACTAATGTTGTTTTACTACAGGTGTCTGTGG
GGCGTAAGCCTGTGACTGGCATGCGATTAACTCTTGAAGGTTCCAAGTCAAATCGATTATGCATCTATCTTCAACATCTGACCAACCTTCCAAAGATCCT
TCTGCCATGTTGGGACACTCATGTAGCAATTGGCGCTCCAAAGTGGCAGGGCCCTGAAAAGCAGGATAGTAGGTGGTTTGAGCCCAGTGAAATGGAAGAA
CTTTTCCCATGTTAGTACTGCACCAATTGAGTGTCCTGAAAGTTTATAGGTGATGATCACTCTGGTGTGTACATAGTAACGGGAACACCAGCTTGGTGTC
TGGAAGTTTGGGTCAAGAAATTGGTTGGAAATAAAGCTTCTGTATTTCAGGGCCCCCGGGAGCGCCATACGAAAATCCTTAAGGGACCTTTCCCCCAAAT
GATAATTGAAACAAAAAATCATTTGTGGAGAATCCACTGGGAATTCTATCTTTTTCCAGGGGAAATTATTTGGGCAAAATTCGGCAAATTCTCTAATCTA
CAAA
>LE_HBa0028L13_T7_138398 (trimmed for quality and cloning vector)
TAGAGTCGACCTGCAGGCATGCAAGCTTTATGTTAGCCAAGAACAAGTATGCTGATTTCTGAATTTGGAAATAGAGTTTTTGTGGAATATTAAATTTATT
TTATACTGATGGAGAAAATGATAAGTTTTGTCCTGAAAGTTTGTCCGACGTAAACTTACCTCCAAAAAAGCTATCAATCATAAATCAATGTTTGTCCTAG
TGTTACAACCTAAGGGTCCATTAGGTTAGCTTTATTGTTGGTCAATTTTAATTCAGTGTGATACCTATTACTGATTTTCTTATTCCATTTAGATTTAAAG
AGCTGTAATTTATGATATAAACTTTGAATAATTTTGAAGTCAAGGGTTAGAACATATTGAAAGTTATATGTATCTTCATCTGACAGTCTTATTTTAATCC
ATCCCGGGCTCTCTTATCCTATTTACTAAATTATCAATGTTCTGAACTAATGTTGTTTTACTACAGGTGTCTGTGGGGCGTAAGCCTGTGACTGGCATGC
GATTAACTCTTGAAGGTTCCAAGTCAAATCGATTATGCATCTATCTTCAACATCTGACCAACCTTCCAAAGATCCTTCTGCCATGTTGGGACACTCATGT
AGCAATTGGCGCTCCAAAGTGGCAGGGCCCTGAAAAGCAGGATAGTAGGTGGTTTGAGCCCAGTGAAATGGAAGAACTTTTCCCATGTT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.961703
Expected error %
0.3406
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g29690.1 Score 118 E Value 4e-29 Identity 80.30% Align. Length 225bp (32.66%) Frame 3
68414.m03628 expressed protein
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAL75908.1| Score 118 E Value 2e-27 Identity 80.30% Align. Length 225bp (32.66%) Frame 3
At1g29690/F15D2_24 [Arabidopsis thaliana] ref|NP_564333.1| expressed protein [Arabidopsis thaliana] gb|AAG51760.1| unknown protein; 124288-121737 [Arabidopsis thaliana] pir||C86420 unknown protein, 124288-121737 [imported] - Arabidopsis thaliana
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_916103.1| Score 112 E Value 6e-25 Identity 71.20% Align. Length 225bp (32.66%) Frame 3
P0481E12.26 [Oryza sativa (japonica cultivar-group)] dbj|BAB56041.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0028L13
Clone
Clone name
hba-28l13
LE_HBa0028L13
P028L13
Clone type
BAC
Contamination
none
Estimated length
98,893
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found