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Clone Read LE_HBa0027P06_SP6_137807

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0027P06_SP6_137807
Primer
SP6
ID from Seq. Facility
LE_HBa_027_P06-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
744 trimmed for vector and quality, 924 raw
Genbank Accession
DU046077
Sequence
>LE_HBa0027P06_SP6_137807 (raw untrimmed)
GACCATCTGCCACAAAATCGACTGGGTGAATCCCGTCTATGTTGATAAACTGACAATGCTAACCACAGCATGTTGACACGTGGAAGATAAACCTTCTCCA
AAACACACTATATCCCCAAGCCCTTGCCATTGTTCAAATCCCCATTTCACAATTGAGAGCAAAGAAAAGAAAAGAAAAGAAAAGAATTGTAAAAAATGGC
TAGTATTTCTGGTACAATGATTAGCACTTCTTTCCTTCCAAGAAAGCCAGCTGTGACTAGCCTCAAAGCCATATCAAATGTTGGTGAAGCTTTGTTTGGT
CTTAAATCTGGTAGAAATGGGAGGATTACTTGCATGGCCAGTTACAAAGTGAAGCTTATTACACCAGAAGGACCTATTGAATTTGAATGCCCAGATGATG
TTTACATTCTTGACCAAGCTGAGGAAGAAGGACATGACCTTCCTTACTCATGCAGGGCTGGTTCTTGCTCATCTTGTGCTGGAAAAGTTACTGCTGGAAG
TGTTGATCAGTCTGATGGAAACTTCCTTGATGAGGACCAAGAAGCTGCTGGATTTGTGCTTACTTGTGTTGCTTACCCAAAGGGTGATGTTACCATTGAG
ACTCACAAGGAGGAGGAGCTTACTGCTTAAATTACAACCATTTCCATTTTAATAAAAAACAACACTTCATTTTGTTTCATGAGCATTTACTTTTCACATT
TTCCCTCTATTGTTATCACAAAAGTTGCTATCTAGTTATTTGTGACAACCCTTTTATCTCCTTACATAATGAATGCACTGTTTATTAATTATTTTCATCT
ATATTGCTAAATTGGATACAATTTCATGCTTTCCCTTATATATAAGAATCATCCATGTTCATCAGACCGTTACTTACAAATTGATGTTATTCCTTTTCGA
GTTACACAAAGAAGCTTATCATAA
>LE_HBa0027P06_SP6_137807 (trimmed for quality and cloning vector)
TGAATCCCGTCTATGTTGATAAACTGACAATGCTAACCACAGCATGTTGACACGTGGAAGATAAACCTTCTCCAAAACACACTATATCCCCAAGCCCTTG
CCATTGTTCAAATCCCCATTTCACAATTGAGAGCAAAGAAAAGAAAAGAAAAGAAAAGAATTGTAAAAAATGGCTAGTATTTCTGGTACAATGATTAGCA
CTTCTTTCCTTCCAAGAAAGCCAGCTGTGACTAGCCTCAAAGCCATATCAAATGTTGGTGAAGCTTTGTTTGGTCTTAAATCTGGTAGAAATGGGAGGAT
TACTTGCATGGCCAGTTACAAAGTGAAGCTTATTACACCAGAAGGACCTATTGAATTTGAATGCCCAGATGATGTTTACATTCTTGACCAAGCTGAGGAA
GAAGGACATGACCTTCCTTACTCATGCAGGGCTGGTTCTTGCTCATCTTGTGCTGGAAAAGTTACTGCTGGAAGTGTTGATCAGTCTGATGGAAACTTCC
TTGATGAGGACCAAGAAGCTGCTGGATTTGTGCTTACTTGTGTTGCTTACCCAAAGGGTGATGTTACCATTGAGACTCACAAGGAGGAGGAGCTTACTGC
TTAAATTACAACCATTTCCATTTTAATAAAAAACAACACTTCATTTTGTTTCATGAGCATTTACTTTTCACATTTTCCCTCTATTGTTATCACAAAAGTT
GCTATCTAGTTATTTGTGACAACCCTTTTATCTCCTTACATAAT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.957075
Expected error %
0.1332
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g60950.1 Score 154 E Value 5e-38 Identity 19.10% Align. Length 407bp (54.70%) Frame 3
68414.m06861 ferredoxin, chloroplast (PETF) identical to FERREDOXIN PRECURSOR GB:P16972 [SP|P16972] from [Arabidopsis thaliana]
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g10960.1 Score 144 E Value 7e-35 Identity 18.10% Align. Length 407bp (54.70%) Frame 3
68414.m01258 ferredoxin, chloroplast, putative strong similarity to FERREDOXIN PRECURSOR GB:P16972 [SP|P16972] from [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAA99756.1| Score 252 E Value 8e-66 Identity 30.40% Align. Length 413bp (55.51%) Frame 3
ferredoxin-I [Lycopersicon esculentum] sp|Q43517|FER1_LYCES Ferredoxin I, chloroplast precursor
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAC38395.1| Score 241 E Value 1e-62 Identity 29.00% Align. Length 413bp (55.51%) Frame 3
ferredoxin I [Solanum tuberosum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0027P06
Clone
Clone name
hba-27p6
LE_HBa0027P06
C10HBa0027P06
P027P06
Clone type
BAC
Contamination
none
Estimated length
127,821
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found