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Clone Read LE_HBa0027H09_SP6_137429

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0027H09_SP6_137429
Primer
SP6
ID from Seq. Facility
LE_HBa_027_H09-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
682 trimmed for vector and quality, 976 raw
Genbank Accession
DU045729
Sequence
>LE_HBa0027H09_SP6_137429 (raw untrimmed)
CCCATTGGTTACCTTCTTAGCAGCAACATGTTAGGTCAGTTGTTGTTCCCTTTTTCAGAAATATGTTTTAAAGTGGATGATATGTCTGAAACTTATTTCG
GATACAGAACAGCTGATGGAAGGAAGTGATATCTGTTGCCGAAATCCTTCGCGACATGATCGAAATTCTTGAAACTAAAGCACCCTTCAATAGTTAACTG
TTTCAGTGATGATTGAATCACTGAGAAGCTTGAAGGGGTGACAAAAAGTTGGTCACAACAGAGGTTACTTCTGTTTATTGAGCAAATGCCTAGTATGAAT
ATAAGAAGCCTTAGAAGCATACTATTATGTTTAAAGAAGAAATGAGTTGGTGATGACTTCATTCTTTCTTAAAAGTGGTTGTTGACACACAGTTTCTTGA
AAATTTGCCTTTTCTTTGAGTGAAAATAGAGGGTGTAGAATGGCCTCAAGAAAATTAAGGTTGGTCAAGAGAATATATAATGGGGAGTTTTTTTGAAAAT
GTCACTATCAGTAGCACTAATTAAGTGGTCTATAGGACTGCATGTGAGGACTATATATCTTGAAAGTGGATGTTAATTTATGGAAAATATTGAAAAAAAT
TTGATTTTAAACTCAACAGTGTTTTTGTTTGAAGTGGAAAATTTCACCTGTCATTTGGTACTTCACTAGTGTGGTTCCAACTACCACCATATATGTTAAT
TTTTTACATGTCTCATTGCTATTTTGAGCAAAAATTTATCTGCTGAATTTGGTATCCTACACCAACTATTTATTCAAAGTGGTTCCATTTGGTGAAACAA
TGTCCCCAATTTTTTTATTTTAAGCCCTTCTTTACAAAAGGGGTATGTTCTACTATTTATTTTTGGCACCTTTTCCGTGGATCCAATCTTTTATTTCTTG
TAATTTTTATTCTGGTCACTGGTCCTAATAAAAAATAAATACTCAAACTTGTTCTTACTGAAAAATAAACTTCCAA
>LE_HBa0027H09_SP6_137429 (trimmed for quality and cloning vector)
ATATGTTTTAAAGTGGATGATATGTCTGAAACTTATTTCGGATACAGAACAGCTGATGGAAGGAAGTGATATCTGTTGCCGAAATCCTTCGCGACATGAT
CGAAATTCTTGAAACTAAAGCACCCTTCAATAGTTAACTGTTTCAGTGATGATTGAATCACTGAGAAGCTTGAAGGGGTGACAAAAAGTTGGTCACAACA
GAGGTTACTTCTGTTTATTGAGCAAATGCCTAGTATGAATATAAGAAGCCTTAGAAGCATACTATTATGTTTAAAGAAGAAATGAGTTGGTGATGACTTC
ATTCTTTCTTAAAAGTGGTTGTTGACACACAGTTTCTTGAAAATTTGCCTTTTCTTTGAGTGAAAATAGAGGGTGTAGAATGGCCTCAAGAAAATTAAGG
TTGGTCAAGAGAATATATAATGGGGAGTTTTTTTGAAAATGTCACTATCAGTAGCACTAATTAAGTGGTCTATAGGACTGCATGTGAGGACTATATATCT
TGAAAGTGGATGTTAATTTATGGAAAATATTGAAAAAAATTTGATTTTAAACTCAACAGTGTTTTTGTTTGAAGTGGAAAATTTCACCTGTCATTTGGTA
CTTCACTAGTGTGGTTCCAACTACCACCATATATGTTAATTTTTTACATGTCTCATTGCTATTTTGAGCAAAAATTTATCTG

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.933844
Expected error %
0.3655
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g41510.1 Score 73 E Value 2e-13 Identity 14.30% Align. Length 293bp (42.96%) Frame 1
68415.m05129 FAD-binding domain-containing protein / cytokinin oxidase family protein similar to cytokinin oxidase, Zea mays [gi:3882018] [gi:3441978]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAB84333.1| Score 73 E Value 7e-12 Identity 14.30% Align. Length 293bp (42.96%) Frame 1
putative cytokinin oxidase [Arabidopsis thaliana] ref|NP_181682.1| FAD-binding domain-containing protein / cytokinin oxidase family protein [Arabidopsis thaliana] pir||T00807 probable cytokinin oxidase [imported] - Arabidopsis thaliana
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0027H09
Clone
Clone name
hba-27h9
LE_HBa0027H09
P027H09
Clone type
BAC
Contamination
none
Estimated length
101,401
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found