Clone Read LE_HBa0170B23_SP6_13625

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0170B23_SP6_13625
Primer
SP6
ID from Seq. Facility
LE_HBa_170_B23-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
3 trimmed for vector and quality, 1321 raw
Sequence
>LE_HBa0170B23_SP6_13625 (raw untrimmed)
CATATACATGCCAGACACAGAAACACAAAGGGGGGGGTATAGATAGNCTCTATGTATCAGTGGCAAACTGTAATNATTAAAGGCTATTAGTAATAGCATC
TAGCACAGAAGACACGAGATATGAGTAGCACCCCTGTGTGAGGAGCTACTAGACACATCATAGAGAACTAATACCGAGATCTGAGTAAGGGGGCTCCCTT
TCTTCCGGACGGGCTCACTGAATAGAGGAGAGATGCGAGGGGCAGAAAACGCTGAGCTCAAATAAGCAGCACGGCACGGTTCCGCATACGGGACGCGGTG
CACGACACAATCCGCTCTTCAGAGAAGAAAGCAGGATACACGTCCAGACTCACCGCACAACCTGTGTATACGAGGAGAGAAGAAGAATAAAAAATATAAC
AAATCGACACACTTAGATCTGAACATGAAACACGNACGTGAGATGAGAGAAAAATAGAAAAATGTAATAATACCTTCACACCAAGAGAGAGAAGCAGACG
ATGAGAGACGTAGNAGAACACAGCACCGAANCGTAGACTGAAGACGAGGGAGCCGCGAAGTACCGGGTGCAATGAAGATTCGCAACAAGCTGAGAAACAA
ACAATCACTATAACGCTCATCACCACACAGCAACACACTTTACTGCAACTAACTGCTCGACTAACACTTAACTAATAACAATGTTATCGTTGGACACTAT
ATAAAACTAACACAATAACATATATAAAGTAATTTAGGTGGGCGGCCGGGAGCCGACCTAAAGACGATGCAGCTATTTGTTTTTTTTTTATGCGTCCCCA
CACCCTCCGCCCACAGGTGACTATACGCTTCTGGCCTCCAAACTAAAAAAAAAGAAAAAAGAGGAGGGGAAAGGGTCAATATCTTATAGTCGGACTGCGC
TCGTATGTAACATACCATCTGCGACACATAATCACGCGCATATTAAGTAGATACAATTCGAGTATCATACCAAGCCACACATCAAACAACCGTGATCAAA
ATAAACGATTACAAAAGTTGCATCAACATGTAAGAAATATGATATATGACTTATCAACATGATGCTATTCAATGCAGTGTAGTACTATATAAGATAGATC
GAANACAAATAATAGCCTTAACGAGTCATCACCACAGATGACGTATACCGAATCACCAGAATATACAAGTAATACCACTATATGATAATGTCGACCACAT
AATCACTACACCGACCATACACACCTCTCTATAATACACCCTGCACCCACACTAGTACTACGCACACGTCTCGCGCGAATACGACTTGCACTTATATTAC
AGCGTCTGTACATATGATAAC
>LE_HBa0170B23_SP6_13625 (trimmed for quality and cloning vector)
TTT

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.984669
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0170B23
Clone
Clone name
hba-170b23
LE_HBa0170B23
C02HBa0170B23
P170B23
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found