Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

Clone Read LE_HBa0025F15_T7_135810

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0025F15_T7_135810
Primer
T7
ID from Seq. Facility
LE_HBa_025_F15-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
834 trimmed for vector and quality, 973 raw
Genbank Accession
DU044972
Sequence
>LE_HBa0025F15_T7_135810 (raw untrimmed)
GGAGAACGGGGACCGGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTCTATCAACGGAACATTTATGGACAATTGCTTCAACAAAGCTCTGAAC
CTGCGATATTTTCCCTCCACGGTCTTTTTCATAAATATCTGTTGAAATGGATGTCTAGGCATGGGAGCATTAATATGGATCGCCTAATCTTTCTTCTTTT
TGTAATCCTTCATAGTTTCAGTAACCTCATTCTCATCTCTATCTTCTTCTATCAATCTTTCAACATCAAACGACAGAGGGGATAAATAGTTTGCTTCCCT
CTATGAGTGGTGACCGCATACGATACCCATCATTTTTCAGATTTTAGATGGTGTTTCCAGAAAGTATGATAGGCTTGAGTAGGTTCATAGTAGCGGACTT
CTTTATCAACACTGCATGGGCATCAATTTTCTGACTAATTCCATATAAATCTTTCCTTATCTCTTTCACATCAAACCTCTTTATCATTTTCTGTATCATT
TCCTCAATGCGAGTCATACTAATACCAGCCTATGTACTACCTAGTAGAACATATGAACCAACCTTATAATTTATGTTTTCATAGTTATTTTGGTTGTAAC
TGTTCTCACGATCATAGTTCTCATCCTGGACATAATTTCCCTCATGGTTGTAGTTATCGTAGTTCCGACCTTATTTCATTGACCATGACATCAATTATCT
AAGTTGGAACCTTGGGAGGTTGGTTCGGAAACCCCCGTCTGATCATTTACCATATTTACGTCTTCCTCAAATAATACTCCTGAAATAGCGGTTGTGGAGT
TCTAGTTTAATAATTTACTACATTTCACCTTTTCTGCACTCCCACTTACATGCCTTAATACTAAGTCAATTTCGGTCCCCATTTAGCCATCTCTTCATCA
ATGCAATCATTTGATTAAATGGGTGAGTATGGACGGGGGGATGCCCTACCAATATTTGCCTTTCTATGCTCCT
>LE_HBa0025F15_T7_135810 (trimmed for quality and cloning vector)
AGCTTCTATCAACGGAACATTTATGGACAATTGCTTCAACAAAGCTCTGAACCTGCGATATTTTCCCTCCACGGTCTTTTTCATAAATATCTGTTGAAAT
GGATGTCTAGGCATGGGAGCATTAATATGGATCGCCTAATCTTTCTTCTTTTTGTAATCCTTCATAGTTTCAGTAACCTCATTCTCATCTCTATCTTCTT
CTATCAATCTTTCAACATCAAACGACAGAGGGGATAAATAGTTTGCTTCCCTCTATGAGTGGTGACCGCATACGATACCCATCATTTTTCAGATTTTAGA
TGGTGTTTCCAGAAAGTATGATAGGCTTGAGTAGGTTCATAGTAGCGGACTTCTTTATCAACACTGCATGGGCATCAATTTTCTGACTAATTCCATATAA
ATCTTTCCTTATCTCTTTCACATCAAACCTCTTTATCATTTTCTGTATCATTTCCTCAATGCGAGTCATACTAATACCAGCCTATGTACTACCTAGTAGA
ACATATGAACCAACCTTATAATTTATGTTTTCATAGTTATTTTGGTTGTAACTGTTCTCACGATCATAGTTCTCATCCTGGACATAATTTCCCTCATGGT
TGTAGTTATCGTAGTTCCGACCTTATTTCATTGACCATGACATCAATTATCTAAGTTGGAACCTTGGGAGGTTGGTTCGGAAACCCCCGTCTGATCATTT
ACCATATTTACGTCTTCCTCAAATAATACTCCTGAAATAGCGGTTGTGGAGTTCTAGTTTAATAATTTACTACATTTCACCTTTTCTGCACTCCCACTTA
CATGCCTTAATACTAAGTCAATTTCGGTCCCCAT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.956702
Expected error %
1.0307
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38730.1| Score 58 E Value 2e-15 Identity 36.60% Align. Length 755bp (90.53%) Frame 2
putative reverse transcriptase [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0025F15
Clone
Clone name
hba-25f15
LE_HBa0025F15
C10HBa0025F15
P025F15
Clone type
BAC
Contamination
none
Estimated length
143,717
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found