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Clone Read LE_HBa0025A22_SP6_135583

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0025A22_SP6_135583
Primer
SP6
ID from Seq. Facility
LE_HBa_025_A22-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
686 trimmed for vector and quality, 915 raw
Genbank Accession
DU044769
Sequence
>LE_HBa0025A22_SP6_135583 (raw untrimmed)
TTTTTTTATGTATAATGTATTATGCTGTTCGAAGATAATAATTTACAGATAGCCAAGTTATTCAAACAATCCAGCCAAATGATGCAAAAGAATTCCAGTA
TCGTGCATTCTACTCTTTTTTCCCGCCATAAATCAAATATTATAAGATGAACCATCTCAATTCACTAAAGCAAATATGTTTCACTTAGACTTAGATGCTG
ATAAAAGCCAAAAGAATATGACTCACTATTTTTCCTTTAATGCTCGTCCAGCTTGACTGTACTCTCGCTCTGGTTCAGGCACAGGCACAGGCACAGGCTC
CCCTTCCACGGCATTCTACAGTATCAGTCAATGGCCAAAATTAGTGTTCTTAAACTATGTCCTAATTAGGAAACCAGAGTGACTGCCTCCTAGGAAACAA
TCATCCATGTCAAGCTCATTAGCTTCAAACCAAAAAACATTATGCTTGTGGAATCACAACATTGTAGTAGAAATCAAAATTTTAAAGATTTAAAATACTG
GATCCCAAAGAATTGAGGGGAGGGTTGAAGAATTTATCAAAGAACAAAAAAAAAGGGAGGGGTGTAGAAATATAAATAACATTATGGTAGTACCTCTGTT
AATGTTTCATTGGGGTGTGAAGCATATGCTTCCCTGTAAGAAATGGCTTTCCTTAGGCGCTTGCCTCGACCTAGCGCTGCTTCCTCCTCGCTTTGATACT
TCTCCCATCTACGCGCACAAGAACACCATGAAAGGAGGCAAAAGCCATAATGAAGGTATACCACTTCAAATGAAATCTTATCATAGTTTTGAAAACTGTG
CATTCTAAGTATGTACCATGGACCTTCTTTTATTCACCATTCATGAAACGACTCCGGGAATTGATCACCGGGAAGGCACAAAAGCAGCATCAGGTTACGG
TATTTTGGGAATTCC
>LE_HBa0025A22_SP6_135583 (trimmed for quality and cloning vector)
AAGATAATAATTTACAGATAGCCAAGTTATTCAAACAATCCAGCCAAATGATGCAAAAGAATTCCAGTATCGTGCATTCTACTCTTTTTTCCCGCCATAA
ATCAAATATTATAAGATGAACCATCTCAATTCACTAAAGCAAATATGTTTCACTTAGACTTAGATGCTGATAAAAGCCAAAAGAATATGACTCACTATTT
TTCCTTTAATGCTCGTCCAGCTTGACTGTACTCTCGCTCTGGTTCAGGCACAGGCACAGGCACAGGCTCCCCTTCCACGGCATTCTACAGTATCAGTCAA
TGGCCAAAATTAGTGTTCTTAAACTATGTCCTAATTAGGAAACCAGAGTGACTGCCTCCTAGGAAACAATCATCCATGTCAAGCTCATTAGCTTCAAACC
AAAAAACATTATGCTTGTGGAATCACAACATTGTAGTAGAAATCAAAATTTTAAAGATTTAAAATACTGGATCCCAAAGAATTGAGGGGAGGGTTGAAGA
ATTTATCAAAGAACAAAAAAAAAGGGAGGGGTGTAGAAATATAAATAACATTATGGTAGTACCTCTGTTAATGTTTCATTGGGGTGTGAAGCATATGCTT
CCCTGTAAGAAATGGCTTTCCTTAGGCGCTTGCCTCGACCTAGCGCTGCTTCCTCCTCGCTTTGATACTTCTCCCATCTACGCGCA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.964012
Expected error %
0.0551
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g44800.1 Score 65 E Value 3e-11 Identity 26.30% Align. Length 113bp (16.47%) Frame 3
68418.m05492 chromodomain-helicase-DNA-binding family protein / CHD family protein similar to chromatin remodeling factor CHD3 (PICKLE) [Arabidopsis thaliana] GI:6478518; contains Pfam profiles PF00271: Helicase conserved C-terminal domain, PF00176: SNF2 family N-terminal domain, PF00628: PHD-finger, PF00385: 'chromo' (CHRromatin Organization MOdifier)
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0025A22
Clone
Clone name
hba-25a22
LE_HBa0025A22
C02HBa0025A22
P025A22
Clone type
BAC
Contamination
none
Estimated length
96,893
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found