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Clone Read LE_HBa0024D02_SP6_134919

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0024D02_SP6_134919
Primer
SP6
ID from Seq. Facility
LE_HBa_024_D02-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
664 trimmed for vector and quality, 951 raw
Genbank Accession
DU046877
Sequence
>LE_HBa0024D02_SP6_134919 (raw untrimmed)
TTTTTTTTAGTACAAAGATAATTTCAAAGTCCATATGAATATTTTCACTTTTGAATTTGCCCATTAAGGATATGAAAACGCGACAATTGTTGGTGCACGG
TCCGAGCAACAATGGACTGTATGAGTGACCTCTCTCATATACCCAAGCTCACATGACTACCACATCCACTCCTCTCACTACTTGGCATCAACGTCTTGGT
CATCCTCACACTAGGATTCTTAGGTGTATTTTTTAAATAAATTATTGCTACTGCTTCATGAGCGAGCCAAACTATCTTATTGTAATTCTTGTTATCTAAT
AAAGCCCATCGGCATTCTTTTCTAAACCGCTTCAAATTATTTTTAGTGATTTATGGGGGCCGTCACCCATCTTATCTATTAATAAAAAGTTGTACTATTG
TATCTATTTTTATCAATATACAAAATACACTTGGCTCTACACATTAACCAAAAAAGTGAAGTTAAAGACATCTTTCAAAAATTTCATCCTTTGATGGAAA
AACATTTTGACATAAAAATTTTATCATTGTATTCTGATGGTGGAGGAGAGTATAAAAGTCTTCACTCTTTTGTTACACTTAAGGAATTGAACACGTCTCT
ACCCCACCCTATACGCCTTAACGAAATGCACTTAAAGAACGACGACATCATCATATCACTGAAACTGCCACAACACTCTTACTTGAGGAATCCCTTTCAC
CCCAATTTTTGGTCTTTTCGCGTGTCATCTAGTGTTTGCCTCATCAACCTTCTGCCACAATCAATCTCCGTTCCAACCGATTACTTGGAAATCACCCAAA
TTATATTTCCTATGGGTTTTTTGTTTGTTTGTGCTATCCATGGATTAAACCCAAACACAACAAAAAAACTTTAACAAAAACTACCCTTGGTTTTCATCTC
GGGATCCTCTTATCACAATACCGGTGCTAATGTTTTGATCCATTTTTAAAG
>LE_HBa0024D02_SP6_134919 (trimmed for quality and cloning vector)
TAAGGATATGAAAACGCGACAATTGTTGGTGCACGGTCCGAGCAACAATGGACTGTATGAGTGACCTCTCTCATATACCCAAGCTCACATGACTACCACA
TCCACTCCTCTCACTACTTGGCATCAACGTCTTGGTCATCCTCACACTAGGATTCTTAGGTGTATTTTTTAAATAAATTATTGCTACTGCTTCATGAGCG
AGCCAAACTATCTTATTGTAATTCTTGTTATCTAATAAAGCCCATCGGCATTCTTTTCTAAACCGCTTCAAATTATTTTTAGTGATTTATGGGGGCCGTC
ACCCATCTTATCTATTAATAAAAAGTTGTACTATTGTATCTATTTTTATCAATATACAAAATACACTTGGCTCTACACATTAACCAAAAAAGTGAAGTTA
AAGACATCTTTCAAAAATTTCATCCTTTGATGGAAAAACATTTTGACATAAAAATTTTATCATTGTATTCTGATGGTGGAGGAGAGTATAAAAGTCTTCA
CTCTTTTGTTACACTTAAGGAATTGAACACGTCTCTACCCCACCCTATACGCCTTAACGAAATGCACTTAAAGAACGACGACATCATCATATCACTGAAA
CTGCCACAACACTCTTACTTGAGGAATCCCTTTCACCCCAATTTTTGGTCTTTTCGCGTGTCAT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.960079
Expected error %
0.4418
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT39281.1| Score 74 E Value 6e-25 Identity 43.60% Align. Length 652bp (98.19%) Frame 3
putative late blight resistance protein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_915573.1| Score 59 E Value 4e-16 Identity 36.90% Align. Length 646bp (97.29%) Frame 3
putative gag/pol polyprotein [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0024D02
Clone
Clone name
hba-24d2
LE_HBa0024D02
P024D02
Clone type
BAC
Contamination
none
Estimated length
107,810
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found