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Clone Read LE_HBa0024A11_SP6_134793

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0024A11_SP6_134793
Primer
SP6
ID from Seq. Facility
LE_HBa_024_A11-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 809 raw
Sequence
>LE_HBa0024A11_SP6_134793 (raw untrimmed)
CACCAAATTTCCGACATCACCGCTGTAGCGGCCTAATCTTACTTCGGCTTTTACATCGCTCTTTAGACTTTGATAATTTTTTTGTCTGGAAAAATGTGTT
TATCTTATATTGCACTATAGGAGAATTTTGAAAAACAGATTTGTATATTTTTGGCTGATCGGAGAATGTCTCGCTCGATACATGCTTAATAAGCGTCGTC
GTTTCAATTTATTCACCGAGATGTGCATATACAACCAAAATGCATTTGATCATGAATAGAAAGTCATTATTTTCAAACATGTATAAAACCTACAGCGAGC
ATTCTACTGAGTGACGCATTTCTACCGTCATATCTTTACTACCCCTATCATACCTATTTTCGCATGACCTCACACTTCTACATTACTTATTCTATCCACT
GATTCGTACACATCCATTTCAAACTAACCATTTATCACCCCAATTCTTCTCGTCTCACACATGGTCCGCAGTGCACACTTCAACACTTATCAATAATATC
TTATCTCTTACCACTACTCTTGTCCACTCCACATCTCTCCAATCTCCTTAATACCCTGTATCCTTCGAAATCTCTCCACCCTCTGCTGTCCTCCATGGGT
GATATACTGATATATGTCACTAAATTACATCTTTAACTCATTCTATCAATATACAATTCCTTTCCCTCCTCCTTGTTTTCTTTCTTTCCTCTCCCTTCTT
TTCTTTCTTCTCCCTTCTCTTCTCTCCCTCTTTCTGCCATCCTACCCTTCTATATCGGTTACGTCCCCCGCTTTCTCGCCCTCTCTTCCTCCCCTCGTTC
CCCCGCCCC
>LE_HBa0024A11_SP6_134793 (trimmed for quality and cloning vector)
TT

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
1.6311
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0024A11
Clone
Clone name
hba-24a11
LE_HBa0024A11
C02HBa0024A11
P024A11
Clone type
BAC
Contamination
none
Estimated length
103,769
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found