Clone Read LE_HBa0023J05_SP6_134445

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0023J05_SP6_134445
Primer
SP6
ID from Seq. Facility
LE_HBa_023_J05-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
7 trimmed for vector and quality, 885 raw
Sequence
>LE_HBa0023J05_SP6_134445 (raw untrimmed)
ATGGTCGTCACGGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCNTNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNCNCCCCCGCNNNCGCCGGCACGGCCGGGAAGAGNCNCCCCCGCCCCGGGCCGAACCNCCCNCCGCGGNGGACGGCNCGACCCCC
GGGGAAAAGCAAGNCCCCAGCAAGACACACCCCCCCANACGGCAGCCCAAGAGACACACAAGCGGCAAAGGGCCAACGGAGGCACCGNGAAGCCG
GGGAG
GCACCACAGGAGACGGAACACAAGACGCGAGAGCACCCCCCCCGAGCGCCAGAACCCACAGGAACACCACGACCCACAGGACACCCCCAAAGAAGGCACC
ACGACCGCACGGCAGCGCCCCCACGACAGCAAGCAGAGCGCCCCCAGAGAAAACCCAAGAAACCCAGGACGGACCGGAACGAAGAAAACAGACCGCGGAG
CCCACAGCACCAGCGAGCACGACACGCCCAACGAAGNCCGACGAACCCCACGAGGGAGCCCCAAGCCGCGCAAAGCCACGCCGCGCGCACCAACCCGAGC
ACCCCCCACGGCCCACACAAAGCGGGACCACAACCCACACCACACGAACCAGGCGACGCGCCCCGGCACCCACAGCAGGGGCGGCACAACACGAGCCCAA
CGACCACACCAACGCCGCAAGCAAACAGGCGGACCGGCAACACCCGCAAACCAAGAACGCAACCCAGCACCCAAAGAGCCCCACGACACCCCACGACAAC
GCGGGGGGCCACACACCAGCCAACCACACAACCAGCCCCGCAGCGCAGGAGCCCAACCACCCCGCGGACACCAGCCGCGCCCGGC
>LE_HBa0023J05_SP6_134445 (trimmed for quality and cloning vector)
GGGAGGC

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.2911
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0023J05
Clone
Clone name
hba-23j5
LE_HBa0023J05
P023J05
Clone type
BAC
Contamination
none
Estimated length
29,234
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found