Clone Read LE_HBa0023C05_SP6_134109

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0023C05_SP6_134109
Primer
SP6
ID from Seq. Facility
LE_HBa_023_C05-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
603 trimmed for vector and quality, 885 raw
Genbank Accession
DU044168
Sequence
>LE_HBa0023C05_SP6_134109 (raw untrimmed)
TAAATTAAACGTCTCCANGTAACGAAGGCATGACCTTTATGGGAAACCCCATGGCGCGCGTTCTTGCATTAAACTGGACCTGAGTATCTGTCATAACGAT
CATAACAAAACGAAAAACAGTAAGCACTTCACCTAAATCAATAACGTAACTTGAACCCCCTCAGCAATAAGGTGAAAGTTCAGATAGTCAACTAACTGAG
CTACTAAGATTTTCTCCAGTGAAAGTAAGAGGATCAGGCTCGACAAAAACACATAGATCATATCTTTTATACTACAAGAAATGAGATCTCTAACCTTTTC
TCACTGTGAATTTGTCATCGATTTGATTGAGAACAGCTAAGCTAAATTGAGCATATCTAATCCAACCAGAAGGCAATGCTGCAGTATTTACCACTGTTAA
ATAAAGTGATAAATGGTCTCCATTGTTCCCTTTTGGGGCCATCAGTACCCTCCTGCAAGACAATGCACCGTATAGTAAATCATCATCGTTACCATCATCA
TATCCGCAATTAAATTTGTAACGTAATCTACTAAAAATAGGATGTGTGTTGATTACCATTGATATGTTCCTACGTTAAAAGCATCAGAGTACGATTTCTT
CCAGTTCAACTTTGAGAAATTGTGGACAGTCCATGTAAATCGGGCTGATACTGGACCTTCCACTTGCCAGTACATCCATCAATACTTGTTGTTTCCGCTG
TAGCCAATGCCAAAAACAAAACATGCGAAATTTATATATAACAGAAGAACCAAAATTGCAAAATTAACACGAAATAATAACTCAAATCAAGGTAAATATG
AAATATCCAAATACCCAAATTGGTGGGAGGGTTGTTGTTAAAAAATTGGGTGAAAATCCCTCTTCAACAATAAGCTGAAGGTCCC
>LE_HBa0023C05_SP6_134109 (trimmed for quality and cloning vector)
AACCCCATGGCGCGCGTTCTTGCATTAAACTGGACCTGAGTATCTGTCATAACGATCATAACAAAACGAAAAACAGTAAGCACTTCACCTAAATCAATAA
CGTAACTTGAACCCCCTCAGCAATAAGGTGAAAGTTCAGATAGTCAACTAACTGAGCTACTAAGATTTTCTCCAGTGAAAGTAAGAGGATCAGGCTCGAC
AAAAACACATAGATCATATCTTTTATACTACAAGAAATGAGATCTCTAACCTTTTCTCACTGTGAATTTGTCATCGATTTGATTGAGAACAGCTAAGCTA
AATTGAGCATATCTAATCCAACCAGAAGGCAATGCTGCAGTATTTACCACTGTTAAATAAAGTGATAAATGGTCTCCATTGTTCCCTTTTGGGGCCATCA
GTACCCTCCTGCAAGACAATGCACCGTATAGTAAATCATCATCGTTACCATCATCATATCCGCAATTAAATTTGTAACGTAATCTACTAAAAATAGGATG
TGTGTTGATTACCATTGATATGTTCCTACGTTAAAAGCATCAGAGTACGATTTCTTCCAGTTCAACTTTGAGAAATTGTGGACAGTCCATGTAAATCGGG
CTG

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.967514
Expected error %
0.3173
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g06600.1 Score 76 E Value 1e-21 Identity 67.30% Align. Length 346bp (57.38%) Frame 1
68418.m00745 ubiquitin-specific protease 12 (UBP12) almost identical to ubiquitin-specific protease 12 GI:11993471 [Arabidopsis thaliana], one amino acid difference
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g06600.2 Score 76 E Value 1e-21 Identity 67.30% Align. Length 346bp (57.38%) Frame 1
68418.m00746 ubiquitin-specific protease 12 (UBP12) almost identical to ubiquitin-specific protease 12 GI:11993471 [Arabidopsis thaliana], one amino acid difference
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAB11409.1| Score 76 E Value 5e-20 Identity 67.30% Align. Length 346bp (57.38%) Frame 1
ubiquitin carboxyl-terminal hydrolase [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_568171.1| Score 76 E Value 5e-20 Identity 67.30% Align. Length 346bp (57.38%) Frame 1
ubiquitin-specific protease 12 (UBP12) [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0023C05
Clone
Clone name
hba-23c5
LE_HBa0023C05
P023C05
Clone type
BAC
Contamination
none
Estimated length
103,433
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found