Clone Read LE_HBa0023C01_T7_134102

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0023C01_T7_134102
Primer
T7
ID from Seq. Facility
LE_HBa_023_C01-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
691 trimmed for vector and quality, 879 raw
Genbank Accession
DU044163
Sequence
>LE_HBa0023C01_T7_134102 (raw untrimmed)
CTCGGTCCCGGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTACAAAGACTCCTAGAGATCCAAAGATTGTGCGGTTGTAAATGGTCCATACG
TATGTTTGCGGACCATCTCCAGTATCAACACTTGGAGGATCCATATTCTATGTTACCTTCATTTATGATTTCAGCAGGAAGCTATGGGTTTACTTTTTAA
AGAATAAGTCAGATGTGTTTGAATCTTTCAAGAAGTGGAAAACTAAAGTTGTAGAATCAGACCGGTTTGAAAGTCAAATGACTAAGGTCTTACAATGCAG
GGGAGTATGACAAATCAGAGTTGAAGGCATTCTGTGTAGCTTCGGGAATCAGATTATTAAAAAGAGTTCCTGGTAAGGCAAGGCAGAATGGAATTGTTGA
GAAGATGAACAGAACATTGAATGAGCGTGCAAGGAGTATGAGGATACACTGTGGGCTGCCCCAAACACTTTGGGCGGATGCTGTGAGCACAACTGCATAC
TTGATCAATAGGGGACCAAAAGTTGCTTTAGGGTTCAAGATTCCAGAAGTGGTGTGGAGAGGAAAAGAACTCAAGTACTCAAATTTTAGGCTTTGCTATT
TATTTTCATTTATTATATATAACAAAAAATAATATGTTGTATTAATATATGTACCCCACCGCCGTGGAAGTTTACTCACGGGGTATTACCACGAAATATT
GGTCTCCTTCTCTCTATATATCTCTCATCTTTTTCTCTCTAAAGTTCTACTTTTCTTTTATTCATCCAAGTGTGGGTGTGTGGAATCCGATCCCACCCAT
TTGGTATCCCGGGGCAAAGGGGATTCAAACATTTTTAACCGGAAACTTGGATTAGTTTCAAAGGCCTTTAAAAAAACCT
>LE_HBa0023C01_T7_134102 (trimmed for quality and cloning vector)
AGCTTTACAAAGACTCCTAGAGATCCAAAGATTGTGCGGTTGTAAATGGTCCATACGTATGTTTGCGGACCATCTCCAGTATCAACACTTGGAGGATCCA
TATTCTATGTTACCTTCATTTATGATTTCAGCAGGAAGCTATGGGTTTACTTTTTAAAGAATAAGTCAGATGTGTTTGAATCTTTCAAGAAGTGGAAAAC
TAAAGTTGTAGAATCAGACCGGTTTGAAAGTCAAATGACTAAGGTCTTACAATGCAGGGGAGTATGACAAATCAGAGTTGAAGGCATTCTGTGTAGCTTC
GGGAATCAGATTATTAAAAAGAGTTCCTGGTAAGGCAAGGCAGAATGGAATTGTTGAGAAGATGAACAGAACATTGAATGAGCGTGCAAGGAGTATGAGG
ATACACTGTGGGCTGCCCCAAACACTTTGGGCGGATGCTGTGAGCACAACTGCATACTTGATCAATAGGGGACCAAAAGTTGCTTTAGGGTTCAAGATTC
CAGAAGTGGTGTGGAGAGGAAAAGAACTCAAGTACTCAAATTTTAGGCTTTGCTATTTATTTTCATTTATTATATATAACAAAAAATAATATGTTGTATT
AATATATGTACCCCACCGCCGTGGAAGTTTACTCACGGGGTATTACCACGAAATATTGGTCTCCTTCTCTCTATATATCTCTCATCTTTTT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.964645
Expected error %
0.4868
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAA32025.1| Score 115 E Value 9e-38 Identity 47.90% Align. Length 561bp (81.19%) Frame 2
unnamed protein product [Nicotiana tabacum] sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Contains: Protease ; Reverse transcriptase ; Endonuclease]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAK29467.1| Score 112 E Value 4e-35 Identity 47.90% Align. Length 561bp (81.19%) Frame 2
polyprotein-like [Lycopersicon chilense]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0023C01
Clone
Clone name
hba-23c1
LE_HBa0023C01
P023C01
Clone type
BAC
Contamination
none
Estimated length
97,489
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found