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Clone Read LE_HBa0023B17_SP6_134085

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0023B17_SP6_134085
Primer
SP6
ID from Seq. Facility
LE_HBa_023_B17-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
377 trimmed for vector and quality, 897 raw
Genbank Accession
DU044148
Sequence
>LE_HBa0023B17_SP6_134085 (raw untrimmed)
GTGGTAGCCGTAAGGGCCAGCCCTTATTCATCATCGTCTTCATCATCATTATTATCCAGCTTGATTTCGCAGTTATATAGCGAAATAGGATCTGGCAATG
TTGTATCATAGAAATCCATCGACGATAATATTGGCTCAAATTGGGCATTGGCTGCGGAAAAACAACCTGTCATATGTTCACAATCATAGTTTGGGCAAAA
ATTTACAATAGGATCAGCAGTTTCACCCCTAATAAGCTCAATGAATTGTTCAAAATTATCCTCATCCAAGAAATTAATAAGCCCAATATCATTAACATTA
TTATTTTCCATTGATGCATTACCACTCTCCATTTTTTTTTTATTTTGGAGAAATAGTGAGAGGGGTCTACTGGGGATTTATAGATGTTTGATTAATATTA
ATTTACTATAACCAAGGGAATCGAATATAGTGACTTGTAGTTGTTAAAACTTAATATTAAAACCCTAATGGTTGTTGACAAATTTTAATTCTATCTAATT
CTTAATTTTATTTAGGCCATCAAATGAACCTTCACCAGATTTCCACCACGTACTACCTTTTTTGTTTTATATTATGGATGAAATAAGAAAAGGATGTTCC
GGATCTAATTTTTTCCAATCCCAAACTAAAAAATTCCTTTTTATTTATTCCGTGCCCCCCAATATCATATAACTAAATTTTTGGTAATCCCCGACCTAAC
ACCTTCATTTTAATTCGTCTCTACTATTCCTCTCCGGGGGGTCCGGAACCTCCCCCCCGTCGCTTACGGCTCACTTGAACACTTCTTTTTACTTTAGAAA
ACTATTTTCGTAATAACAAATATAACCTTCTTCAAACTTATTACATCTTCCATTCAAGTTTTTTAGAGTCTATACCTTTTTCTTTTTTTTTTATTCA
>LE_HBa0023B17_SP6_134085 (trimmed for quality and cloning vector)
TTCATCATCGTCTTCATCATCATTATTATCCAGCTTGATTTCGCAGTTATATAGCGAAATAGGATCTGGCAATGTTGTATCATAGAAATCCATCGACGAT
AATATTGGCTCAAATTGGGCATTGGCTGCGGAAAAACAACCTGTCATATGTTCACAATCATAGTTTGGGCAAAAATTTACAATAGGATCAGCAGTTTCAC
CCCTAATAAGCTCAATGAATTGTTCAAAATTATCCTCATCCAAGAAATTAATAAGCCCAATATCATTAACATTATTATTTTCCATTGATGCATTACCACT
CTCCATTTTTTTTTTATTTTGGAGAAATAGTGAGAGGGGTCTACTGGGGATTTATAGATGTTTGATTAATATTAATT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.93629
Expected error %
0.1622
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAW22875.1| Score 196 E Value 2e-49 Identity 33.30% Align. Length 275bp (72.94%) Frame 2
bHLH transcriptional regulator [Lycopersicon esculentum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAN39037.1| Score 182 E Value 2e-45 Identity 33.30% Align. Length 254bp (67.37%) Frame 2
bHLH transcriptional regulator [Lycopersicon esculentum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0023B17
Clone
Clone name
hba-23b17
LE_HBa0023B17
C06HBa0023B17
P023B17
Clone type
BAC
Contamination
none
Estimated length
111,977
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found