Clone Read LE_HBa0022I12_SP6_133643

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0022I12_SP6_133643
Primer
SP6
ID from Seq. Facility
LE_HBa_022_I12-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
532 trimmed for vector and quality, 967 raw
Genbank Accession
DU041296
Sequence
>LE_HBa0022I12_SP6_133643 (raw untrimmed)
GGGAAACTAAATCGTTTGCCCACCAAGGAAGAAATTATTAGTCAAATTTTAAAAGTGGCTTATTGGAAAAGATTGATCACTGTTTGGCTGGTAAACAAAA
TATACTTTCCTTTTATGTCCTAAACCCCTTCAAGAAAGACTGAGTTGCTTGAGTTGGTGCACTCTGATTTATGTGGTCCAATAAAGACAGACGTTGGATG
ATGCACTCTACTTTGTCACTTTGATTGATGATTGCTCAAGAAAACTTTGGGTCCATGTCTTATAAACTAAATACCAAGTGTTAGGTGTCTTCAAGAATTT
TCATGGTTCAGTTGAAAGAGAAACTGAAAAGTACTAATAATGGTTGTGAATATTGTGGACAATTCAATGGATACTACAAGTAGTAAGCTATTACTTATTA
GACACCAAAAGACTCCTCACAAGACTCTTCATCTTAATGGTTTGGCGGAGAGGATGAACATGACCTTTATGGAACGAGTTAGATGTTTTCTTTCTAAAGC
AAAGTTGTCGAACTCATTTTTGGGTGACGCGTTATTGACCGTTGCACATATTATTTCATCTATCTCGTCTTGGTGCTTTGAAAAGTGATGTACCAAATTT
TTTTTTGTATAGACAATATGTTTCGTATGACCATTTGATTATATTTAGTTGCAAAATCTTTGTTATAATTTGCTGAAAGATGAGAGGTCAAAATATAATG
CCAAAACAATGTTCTGCATCTTTTTTTTTGTATGGTCTTATTTTTTTTTGTTTTCGCTATAATGATTCCTTTTGACAATAAACTTTGAGAACTCCCAAGC
AATTAACTTTATCTTTAGGCTACCAACAGTCTAATTTCCCACTCCTCCACATCGCTGAACTCTCACTTCTTGCATGGGTTTAAGTGATCATATAGTAATT
TCCCTTCCTACTCTGCCTTGACTTTCCTGGCCTTCGCGTATTCTTTTTCTCCCCACGCTCTCTTTCC
>LE_HBa0022I12_SP6_133643 (trimmed for quality and cloning vector)
GATCACTGTTTGGCTGGTAAACAAAATATACTTTCCTTTTATGTCCTAAACCCCTTCAAGAAAGACTGAGTTGCTTGAGTTGGTGCACTCTGATTTATGT
GGTCCAATAAAGACAGACGTTGGATGATGCACTCTACTTTGTCACTTTGATTGATGATTGCTCAAGAAAACTTTGGGTCCATGTCTTATAAACTAAATAC
CAAGTGTTAGGTGTCTTCAAGAATTTTCATGGTTCAGTTGAAAGAGAAACTGAAAAGTACTAATAATGGTTGTGAATATTGTGGACAATTCAATGGATAC
TACAAGTAGTAAGCTATTACTTATTAGACACCAAAAGACTCCTCACAAGACTCTTCATCTTAATGGTTTGGCGGAGAGGATGAACATGACCTTTATGGAA
CGAGTTAGATGTTTTCTTTCTAAAGCAAAGTTGTCGAACTCATTTTTGGGTGACGCGTTATTGACCGTTGCACATATTATTTCATCTATCTCGTCTTGGT
GCTTTGAAAAGTGATGTACCAAATTTTTTTTT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.954623
Expected error %
0.9327
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAV88069.1| Score 84 E Value 2e-15 Identity 13.40% Align. Length 446bp (83.83%) Frame 3
hypothetical retrotransposon [Ipomoea batatas]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
pir||T02206 Score 80 E Value 2e-14 Identity 13.00% Align. Length 431bp (81.02%) Frame 3
hypothetical protein - common tobacco retrotransposon Tto1 dbj|BAA11674.1| ORF(AA 1-1338) [Nicotiana tabacum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0022I12
Clone
Clone name
hba-22i12
LE_HBa0022I12
C10HBa0022I12
P022I12
Clone type
BAC
Contamination
none
Estimated length
69,727
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found