Clone Read LE_HBa0022F15_SP6_133505

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0022F15_SP6_133505
Primer
SP6
ID from Seq. Facility
LE_HBa_022_F15-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
642 trimmed for vector and quality, 905 raw
Genbank Accession
DU041177
Sequence
>LE_HBa0022F15_SP6_133505 (raw untrimmed)
ACCTCGAATGCATCAAACCAACCAATGGGAGACCTACATCTCCTCCCATACAATGCTTCAAATGGGGCCATATCAATACTTGAGTGATAGCTATTATTGT
ATGAAAACTCCACTAAGGGTAGGAAGCTATCCCAATGGCCACCAAACTCTATCACACATGCACGAAACATATCCTCCAACACTTGAATCGTCCTTTCAGA
CTGACCATCGGTCTGAGGATGGAACGCAGTACTAAGGTCCAACCTAGTACCCAATTCCGCATGCAATGTTTTCCAAAACTTAGAAGTAAACTGCGGACCC
CTATCTGATATGATGGATAGTGGAACCCCATGCAATCGAACGATCTCTGAGATATAGATCTTAGCTAACTTCTCTGCATTGTAAGTCATCTTTACCGAAA
TGAAATGAGCAGATTTAGTTAACCTATCAACAATCACTCTAATGGAGTCATACTTACCCATCGTCCTTGGAAGACCAACCACAAAGTCCATTGCAATTCT
TTCCCACTTCCATTCCGGAATGGGCATTCTCTGAAGTGTTCCTTCGGGCCTTTGGTGTTCATACTTTACTTGTTGACAGTTTGGACACTTGGCAATAAAA
TCAACAATATCACGCTTCATTCTACTCCACCAAAAGTGTTGTTTTAGGTCACGATACATCTTGGTTGCACCCGGATGTATAGAATACCTTGAACTAAGAG
CCTCTGTCAGAATAGTGTTGATCAAATCATTGACGCGGGGTAAACATTCCCTTTCCCTTGATTCTCAAAACACCCTTCCCCATCGATTTGTGCCTCCTTA
CCCCTCCCTCCCATAACCTAATCTTGAATCCTTCCAAGTTTCCCATCAACAAACGGTTTCCCCTAATTTTGTCAGAAAAGAAAATCTTGATTCCCTAAAA
CCCAA
>LE_HBa0022F15_SP6_133505 (trimmed for quality and cloning vector)
CAACCAATGGGAGACCTACATCTCCTCCCATACAATGCTTCAAATGGGGCCATATCAATACTTGAGTGATAGCTATTATTGTATGAAAACTCCACTAAGG
GTAGGAAGCTATCCCAATGGCCACCAAACTCTATCACACATGCACGAAACATATCCTCCAACACTTGAATCGTCCTTTCAGACTGACCATCGGTCTGAGG
ATGGAACGCAGTACTAAGGTCCAACCTAGTACCCAATTCCGCATGCAATGTTTTCCAAAACTTAGAAGTAAACTGCGGACCCCTATCTGATATGATGGAT
AGTGGAACCCCATGCAATCGAACGATCTCTGAGATATAGATCTTAGCTAACTTCTCTGCATTGTAAGTCATCTTTACCGAAATGAAATGAGCAGATTTAG
TTAACCTATCAACAATCACTCTAATGGAGTCATACTTACCCATCGTCCTTGGAAGACCAACCACAAAGTCCATTGCAATTCTTTCCCACTTCCATTCCGG
AATGGGCATTCTCTGAAGTGTTCCTTCGGGCCTTTGGTGTTCATACTTTACTTGTTGACAGTTTGGACACTTGGCAATAAAATCAACAATATCACGCTTC
ATTCTACTCCACCAAAAGTGTTGTTTTAGGTCACGATACATC

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.971857
Expected error %
0.3368
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38745.1| Score 351 E Value 7e-96 Identity 25.20% Align. Length 638bp (99.38%) Frame 1
putative polyprotein, 3'-partial [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT66771.1| Score 347 E Value 1e-94 Identity 25.00% Align. Length 638bp (99.38%) Frame 1
putative polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0022F15
Clone
Clone name
hba-22f15
LE_HBa0022F15
P022F15
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found