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Clone Read LE_HBa0019J16_T7_132164

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0019J16_T7_132164
Primer
T7
ID from Seq. Facility
LE_HBa_019_J16-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
627 trimmed for vector and quality, 922 raw
Genbank Accession
DU049175
Sequence
>LE_HBa0019J16_T7_132164 (raw untrimmed)
AGGGTCCCGGGGGATACTCTAGAGTCGACCTGCAGGCATGCAAGCTTGGCCCTTAATATCCCAGCTGCTTTCGACACACAAGATCTCCAATTACTCTCAT
CTGTCTCCAATCTAAACTCATGGCACTTTAGTATTACATCCAGTGCCTCTTTACATTTCTTGGTATCACCATTGTGGTTAAAAAGACTAGCAATTTCGTT
GGCATCTGTGTTAAAGAACAAAGGAATCAAGTTCTTCTTTTGCGCGAAGAATCTTATTTCCTCCAAGCTATGATGGTTGGAGAAGCTACAACCAGTGACA
ACTATGACACCAAAGGTGACTGAGCATATAACTTTGTCAGCAATCTCATGGCTCTGATTATCTGCATACTTTGCTCTATCAGCAATAAAACAAGCAATTC
CCTGAAGCTCAAGTTCTGATTTGAGCCACTTACAGAAGCGTACTAAATTCGGGTTCTGACCATGGAATCCTATATACACATCACAGCTCCTAAGTTTAGC
ATTGGAAGCAGGTGAAACCGACCCCTTGGCAAACGAAATTCGAGGGACAGGGAAAGAAAATGATATCCTGGGATCGGTTTCCGGTCCTGAAACTGGGACA
CAGGTGACAATCTTGAGCTTTGTGTCTGTAGGATCATCAGAAAAATCATATCTTTTCTGGTGGTGGAGTGTAGGAGGTGCTGGGGAACATCATCAGATTG
CGAGCCGCCGTTATGAAAACGGGGGGGGATGGATGGACAACCTGAGGGTAGAAGGAACAAGGGGAGTTTCTTTGATTTTAATTTGGGAACCAAATTGGGC
TCTTGGCAGAAAATGTTAATGTGGATTTTTAATTGCTTAAAATCAAACATGCCAAAAAAATTGAGGGAAAATAATTGAGATAAAAAGGGTGGAATTTCTT
TATTCGCCGAAATGTTATTATT
>LE_HBa0019J16_T7_132164 (trimmed for quality and cloning vector)
AGCTTGGCCCTTAATATCCCAGCTGCTTTCGACACACAAGATCTCCAATTACTCTCATCTGTCTCCAATCTAAACTCATGGCACTTTAGTATTACATCCA
GTGCCTCTTTACATTTCTTGGTATCACCATTGTGGTTAAAAAGACTAGCAATTTCGTTGGCATCTGTGTTAAAGAACAAAGGAATCAAGTTCTTCTTTTG
CGCGAAGAATCTTATTTCCTCCAAGCTATGATGGTTGGAGAAGCTACAACCAGTGACAACTATGACACCAAAGGTGACTGAGCATATAACTTTGTCAGCA
ATCTCATGGCTCTGATTATCTGCATACTTTGCTCTATCAGCAATAAAACAAGCAATTCCCTGAAGCTCAAGTTCTGATTTGAGCCACTTACAGAAGCGTA
CTAAATTCGGGTTCTGACCATGGAATCCTATATACACATCACAGCTCCTAAGTTTAGCATTGGAAGCAGGTGAAACCGACCCCTTGGCAAACGAAATTCG
AGGGACAGGGAAAGAAAATGATATCCTGGGATCGGTTTCCGGTCCTGAAACTGGGACACAGGTGACAATCTTGAGCTTTGTGTCTGTAGGATCATCAGAA
AAATCATATCTTTTCTGGTGGTGGAGT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.97421
Expected error %
0.3698
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g56220.1 Score 281 E Value 3e-76 Identity 23.20% Align. Length 608bp (96.97%) Frame 1
68418.m07016 expressed protein
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g23440.1 Score 132 E Value 1e-31 Identity 13.50% Align. Length 482bp (76.87%) Frame 1
68417.m03379 expressed protein
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAC42065.1| Score 281 E Value 1e-74 Identity 23.20% Align. Length 608bp (96.97%) Frame 1
unknown protein [Arabidopsis thaliana] dbj|BAB09113.1| unnamed protein product [Arabidopsis thaliana] gb|AAO63925.1| unknown protein [Arabidopsis thaliana] ref|NP_200433.1| expressed protein [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAB79299.1| Score 132 E Value 5e-30 Identity 13.50% Align. Length 482bp (76.87%) Frame 1
hypothetical protein [Arabidopsis thaliana] emb|CAA20465.1| hypothetical protein [Arabidopsis thaliana] ref|NP_194075.1| expressed protein [Arabidopsis thaliana] pir||T05382 hypothetical protein F16G20.140 - Arabidopsis thaliana
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0019J16
Clone
Clone name
hba-19j16
LE_HBa0019J16
P019J16
Clone type
BAC
Contamination
none
Estimated length
110,965
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found