Clone Read LE_HBa0167L01_SP6_13200

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0167L01_SP6_13200
Primer
SP6
ID from Seq. Facility
LE_HBa_167_L01-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
1 trimmed for vector and quality, 2055 raw
Sequence
>LE_HBa0167L01_SP6_13200 (raw untrimmed)
ATACGGACCCATCGTGCGATCTACGCGTGAGAGCTANGCAGTGTGCATGAGCTANGTATCATCGATCGATCACTCTGATGTNATACGTACGCAGTCAGAT
GCGCAGACATGCTCTGTACTATCTGCTCGGTCGCATAGATTCGATCTCTCTCGTCTTAGAGCNTANCGNATCNCTCACTCTCGCGTATCTATCTGCGCGA
CTCTCATCCCTGCTGTCACTCTCTCTCGCTGCATTCACACNGACCACTGTGAGNCGANACACATATCGTACAGACGACTAGTNTAGCGTCNTACTGCGAG
CACCCACGTGCTCAGAGTGGANCTNACTGTCTACTTTACNTTCGANANTGTGGNACAGACTAGTTAGNTCACTAGTTACTATACATTCGGNTGTGCATGA
GCATATTAAGAGGCTNCGGAAAGGACTNGNGNGCAAGTGAATGCTACACATGGATAAAGTGCGTGNCTGANCGAGCTAAGGCGTANTGANAAACNCAANA
GTNANTNCTACGNAGNATGATATGCACTACTGCATACGACTGCGTGCGCTCGTCGCGTAGCCGACTATNGANTNGTATTANGTTCCTATGCTGCTGCGAG
TAANGTAGACTNACTNCATATGCCCTCACNTATNCAGCGTNCTACCTACTACATAGCGATACATATTACTGCAACACGCCAAANTGNTANGNTCGCCGTA
GCGACGCGCGTGCGACCNTNCACNCTNCNATAGCCCNACNCGTGCATNTNCTNCTATATGTTNGTNATGTGCGTCGAATGANATAGTCGTAGATTACTTN
ANTGTAANATNATACTATGCTGTGATAAATAANTAATGACTCAGCNCNTNATGAGTGCCTANCAGACCATCATGTNCCGTTATCATGATCTNGTGTGTNC
TATATCNTACGCGCGTNGCTTGNCGATGAGTNGTNATGTTAGGACGCANGAGANCCCTGATGACTAGTAGTNTANGCCTATATTGTAGCGACTATTGCTA
TATCATGCACGANCTNCGTCCGTGCGANGNTGCGAATGTGCTGATCGCTACTNCACCGCCGCGANANTGACCNCAAGTNGCATGCGTNCTNCGCTAGGTG
CGTGTNGTCGCTGAGTNCGCGCGTGCGCTGCGAGAGAGCAGACAGCCTCACTACGCCCNGACGCGCAGACACTCCTAGCTGCGCTGCGTGANCGCTGTAG
AACGCGCAGCGTGCTGNAGCCGTGACTNTNATTNGTGCACNGGNGCGTGCGTGACCTATNCTGATGCGATNCACTGGTATGTCGTCGTGTGCCAATNGCA
TNGTTATGTAGCTNCNCTATTGCATGCTACACNCATCTGTGTCTTNCTACAAATATNANACTTANTATGTGATACGTTGCAATAATTGACTTACTATATA
CCTNATANTATTGTGCNCATTCTTATGTAGCTGTACTGCTGGTCTTGCATTCTGATTACTGTTCACATNGTAGTGTGACACGACAATACTATACTGTGAT
ACTTATAGTACCTNCTGTACANGCACCATTCCGACNCTTACTGTAGCGCACATACGCTGACAGATCCGTGATNGCNGTACGCTTTTTGTGANATTTNATG
CTGAATGAGGAGACACTACAACTCGCTTCTCACGACACNGATACTGCNACTGAGCGATGCGGNGTATACTGCTACGATGTCNGTGCATATATACTGATTC
CTGACTGATGCTATTTGTCAGTACAGATGNAAGANATATGTGGTGTGCGATATGNATAATGCTCCAGCCGCACTCACAGATCTGCGCANACTGTACTNGC
CGTCTCGTTAGCGTNATGTCGTGNACGCATGCGTCGACTGACTGCATACGACNGTTGATGCCGACGACTGCACACGCACGGCTGTTCACAGGCTCTGAGC
TGCTCACACTGTGTCTGCCATCACTAAGTCGCGAGTGCACTCNGATCGTCAGCTCGATGAGATAGTCGCTGTGCTGGCGATTATGCTGAACTGCCTTCGT
ATATGTACTTGCTGCATTGTGTGATTNGTCTCTTGTCTCTCTTCTCTCTCATCTC
>LE_HBa0167L01_SP6_13200 (trimmed for quality and cloning vector)
A

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • High predicted error rate
  • Low complexity
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
100
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0167L01
Clone
Clone name
hba-167l1
LE_HBa0167L01
C03HBa0167L01
P167L01
Clone type
BAC
Contamination
none
Estimated length
109,608
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found