Clone Read LE_HBa0018J11_SP6_131385

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0018J11_SP6_131385
Primer
SP6
ID from Seq. Facility
LE_HBa_018_J11-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
4 trimmed for vector and quality, 989 raw
Sequence
>LE_HBa0018J11_SP6_131385 (raw untrimmed)
GTGAGGGCAGGGACAAAGAAGAGCATGGCAGACACGCCCAGCCGTCACGGTCAATCCAGCAGCACGCGCAAAGTGGTCGTATCTAATACCCCCTCAACTT
AAAGAAGCTCAAACCAACACGACGAGTTTGGAGGGGCACTCATATCGGTGAGCGGTCTTGAGACGACCTGCCGACATTTGTTCTTGAGAATAATCGTAAA
ATTAGACGACCACAGCCGTAATGACAGACGACAATTATGTAGGCTCTTACACTGGTCGGAAAAAAGATGATAACGTTATTGCTTCATCTGCAACGTCTCA
GGGCGGTACAAAGGAGAGTAGAGCTGGTGGCAAAACCCACATTTTATACTGACCGTTATATAACCAATGTAGAAAAAACGAAAAAGAAGGTTCTCCGAGG
GCCATAAACTTCCACAACATATGAGCTGTTATTCATTTCCCATGTCGGTGAAACTGCAGACCGGATGCGCCATCGTGCTAACACAACACATTATCAGTGG
TTCTATCGATACTGTTCCGCCCTGGTTCCCTGATAAATGGATATAGCAACATTTCTACTCGCGAATATGACGATTGTCTCGTAAGTAAAAATGACATCTG
AACGCGCGTTCCAAGTAATCCGTCCGCCATCATCTCGCGCGCAGGACTGCTGAGGTCAAACGCACGCGGCTGGTCGGAACTTAGCGCTCTTTTTGGCGGA
CAGTAACCTATACCTCTTATCGCTTTGGCTGCCCCTCTATTGCATAGTTCATACCTATTCGACGAGTTCCAGTATGTCGAATCATCGACACCGTACCGTC
TGTCCCATGTAGTCCCTTGTGACCCAGTACCCGTCCCCACCGACCCCTTATTCAGGGGCTTGTACGCGTGCGGTATGTCGGAACTGATGCATGCTTGGAT
GAACTCCTCCGGCAGTAATGCCAGTGACCGTGGACACTCCTATCAGCTACCGGGCTGATACGAGGATACGTGAGCCCCTCACACCCACA
>LE_HBa0018J11_SP6_131385 (trimmed for quality and cloning vector)
CCCT

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.9396
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0018J11
Clone
Clone name
hba-18j11
LE_HBa0018J11
P018J11
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found