Clone Read LE_HBa0018J05_SP6_131373

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0018J05_SP6_131373
Primer
SP6
ID from Seq. Facility
LE_HBa_018_J05-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
707 trimmed for vector and quality, 863 raw
Sequence
>LE_HBa0018J05_SP6_131373 (raw untrimmed)
GGAATTTGGCAACNCGGATNCTNGTGNCAGTCCCGAGCAAGCTATTAAATGACTTGGGAATAGCTATAGAAACGCTCTAAACGATGCACAGAAGATAAAA
CACTAAAAATGACAAGAAGGGTTACAATATCCACTACTAAAAAGAACTTTCGTCTGCGAAAGTAAGGGTCAAGAAGTACCTGAAGGCTCAAACAAGCCGG
GAAACTGCTCTCGCATTTCCTGCTCGGTCTCCCAGGTAGCCTCCTTGAGTGAACGATGCCTCCAACGGACCTTAACAATAGGAATGGCTCTAGGCGCAAT
TTCCTCACATCTCTGGCTAGGATGGCAACTGGCTCTTCTACAAATGTCAAATGATCATCCAACTCAATTGCATCATACTAGAGCACATGGGACTCATCAA
GAATATATCGGCGTAGCATCGAGACATGGAAAACTGGATGGATGGATGAAAATGCTGGAGGTAGGTCCAACTCATAAGCAACCTCCCCAACTGTCCGAAG
TATCTCAAAAGGCCCAATATACCTGGGGCTAAGCTTACCCCATCTCCCAAATCTCATCACACCCTTCATGGGAGACACACGGAGAAATACCCGATCACCA
ACAGAGAATCTCAAAGGTCGACGCCTCCGTTCTCATAACTCTGGTGCCTACTCTGAGCTGTCCTGAGTCTATCCTGAATCACTCTCACCTGCTCCAAAGC
CTCCTGAATCAAATCTGTACCTCGCGGCCTAGGCTCTGTAGACTCGAACCAGCCCACTGGAGTGCGACAACCCCTACCTACAAGGCCTCAAACGGGGCCC
ATTGAATGCTAGAATGGTAGCTGGTGTTATATGCAAATTCCGCCAAACCCAACCCCTAGTCCC
>LE_HBa0018J05_SP6_131373 (trimmed for quality and cloning vector)
GAATAGCTATAGAAACGCTCTAAACGATGCACAGAAGATAAAACACTAAAAATGACAAGAAGGGTTACAATATCCACTACTAAAAAGAACTTTCGTCTGC
GAAAGTAAGGGTCAAGAAGTACCTGAAGGCTCAAACAAGCCGGGAAACTGCTCTCGCATTTCCTGCTCGGTCTCCCAGGTAGCCTCCTTGAGTGAACGAT
GCCTCCAACGGACCTTAACAATAGGAATGGCTCTAGGCGCAATTTCCTCACATCTCTGGCTAGGATGGCAACTGGCTCTTCTACAAATGTCAAATGATCA
TCCAACTCAATTGCATCATACTAGAGCACATGGGACTCATCAAGAATATATCGGCGTAGCATCGAGACATGGAAAACTGGATGGATGGATGAAAATGCTG
GAGGTAGGTCCAACTCATAAGCAACCTCCCCAACTGTCCGAAGTATCTCAAAAGGCCCAATATACCTGGGGCTAAGCTTACCCCATCTCCCAAATCTCAT
CACACCCTTCATGGGAGACACACGGAGAAATACCCGATCACCAACAGAGAATCTCAAAGGTCGACGCCTCCGTTCTCATAACTCTGGTGCCTACTCTGAG
CTGTCCTGAGTCTATCCTGAATCACTCTCACCTGCTCCAAAGCCTCCTGAATCAAATCTGTACCTCGCGGCCTAGGCTCTGTAGACTCGAACCAGCCCAC
TGGAGTG

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.975993
Expected error %
0.2053
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT66771.1| Score 191 E Value 1e-84 Identity 90.50% Align. Length 591bp (83.59%) Frame 2
putative polyprotein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAV31169.1| Score 191 E Value 7e-84 Identity 90.50% Align. Length 591bp (83.59%) Frame 2
putative polyprotein [Solanum tuberosum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0018J05
Clone
Clone name
hba-18j5
LE_HBa0018J05
P018J05
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found