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Clone Read LE_HBa0018G22_T7_131264

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0018G22_T7_131264
Primer
T7
ID from Seq. Facility
LE_HBa_018_G22-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
708 trimmed for vector and quality, 913 raw
Sequence
>LE_HBa0018G22_T7_131264 (raw untrimmed)
TCTGACCCGGGGGGACCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTTCTCACGTCTTCAGACTTGCGATGAGAGGTTTGAGGTTAGATTACCTCTCTT
TACTTCCTGTTGGTTTGCATTGGTGAAACTGGAATGGACTTCCCATTGTAGTATTTACCTTGAGGAGCCATCACTTAAAATTACATATTTGTTCATTTCT
TGTCCCCTTCCAGGTTAAAATGATGTTGATGAAAGTAATTGCCCGAACAGTTGGGCTCCATCACTTGATTTTGTTGAACTTCTATCCTTACCTTCAGAGA
TATGTTCAGGTATCTAATTATGAAATTTCCTTTGGCATTACAGTTGATATTTCTTTTGGTAGGGTACTTTCACGTTCATACTTAAGGTTGGTGTGTGGGT
GTTCTTATATTGCAGCCCCATCAGCGCGATGTGACAAATTTGCTTGCTGCAGCGGTTCAGGCATGTCATGATATGGTACAGTGTTTCTATTCTGCAATTT
CTTTTTTTTTCTTTTGTTAAACTTGCTAGTCTTCTCCTCCTCAGATGATATCTTATTTTGACAGGTGCCTCCTGATGCTGTTGAACCATTATTTAAACAA
GTAGTCAATCAGTTTGTGCATGACCGTTCAAGGCCTGAGGTATTCAATATGACATTCATATCTCATTAGGATCATATATGTTGTGCACAAATAATATTTC
ATTCTAAATCTTTATTTGACATTTGCAGGGCTATTCCGGCCGGACTCAATGTTAATCGAAGAAATATGCTTACGCATGCCTTTTTGTTTTTCTCAAAGTT
TCCCCAAATTTATCTGTCCTTTTATTTACTTACCCAGTTAAATTAATTTATTTAACCACTCTTCATTCGTTTTGGCGGGTTTAAACTATTCCCCCGCACC
TTTTTGGTTCAAT
>LE_HBa0018G22_T7_131264 (trimmed for quality and cloning vector)
AGCTTTTCTCACGTCTTCAGACTTGCGATGAGAGGTTTGAGGTTAGATTACCTCTCTTTACTTCCTGTTGGTTTGCATTGGTGAAACTGGAATGGACTTC
CCATTGTAGTATTTACCTTGAGGAGCCATCACTTAAAATTACATATTTGTTCATTTCTTGTCCCCTTCCAGGTTAAAATGATGTTGATGAAAGTAATTGC
CCGAACAGTTGGGCTCCATCACTTGATTTTGTTGAACTTCTATCCTTACCTTCAGAGATATGTTCAGGTATCTAATTATGAAATTTCCTTTGGCATTACA
GTTGATATTTCTTTTGGTAGGGTACTTTCACGTTCATACTTAAGGTTGGTGTGTGGGTGTTCTTATATTGCAGCCCCATCAGCGCGATGTGACAAATTTG
CTTGCTGCAGCGGTTCAGGCATGTCATGATATGGTACAGTGTTTCTATTCTGCAATTTCTTTTTTTTTCTTTTGTTAAACTTGCTAGTCTTCTCCTCCTC
AGATGATATCTTATTTTGACAGGTGCCTCCTGATGCTGTTGAACCATTATTTAAACAAGTAGTCAATCAGTTTGTGCATGACCGTTCAAGGCCTGAGGTA
TTCAATATGACATTCATATCTCATTAGGATCATATATGTTGTGCACAAATAATATTTCATTCTAAATCTTTATTTGACATTTGCAGGGCTATTCCGGCCG
GACTCAAT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.959271
Expected error %
1.0088
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g13160.1 Score 50 E Value 2e-19 Identity 71.40% Align. Length 428bp (60.45%) Frame 2
68414.m01526 SDA1 family protein contains Pfam PF05285: SDA1 domain; similar to mystery 45A (GI:16797816){Drosophila melanogaster}
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g31520.1 Score 47 E Value 4e-17 Identity 65.50% Align. Length 428bp (60.45%) Frame 2
68417.m04476 SDA1 family protein contains Pfam profile PF05285: SDA1
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|XP_526583.1| Score 55 E Value 8e-14 Identity 48.60% Align. Length 606bp (85.59%) Frame 1
PREDICTED: similar to SDA1 domain containing 1 [Pan troglodytes]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAB14177.1| Score 55 E Value 8e-14 Identity 48.60% Align. Length 606bp (85.59%) Frame 1
unnamed protein product [Homo sapiens]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0018G22
Clone
Clone name
hba-18g22
LE_HBa0018G22
C02HBa0018G22
P018G22
Clone type
BAC
Contamination
none
Estimated length
107,600
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found