Clone Read LE_HBa0017I06_SP6_130559

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0017I06_SP6_130559
Primer
SP6
ID from Seq. Facility
LE_HBa_017_I06-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
685 trimmed for vector and quality, 942 raw
Genbank Accession
DU049767
Sequence
>LE_HBa0017I06_SP6_130559 (raw untrimmed)
GGCCATTGGTCGAACTATATTGGCTTTATATTAGAGGTAAGTTATTCATGAGTTGAGCAGCCTTAAGGTAAGTGTTCCTTATTACCTTTATCAATTTTAA
GTTATTGTTTAGCATTCCAATTCGCATACTCGTACGTGCAATGTACTAATGTAAGTTGGCATGCATCGTCTGATGATGCAGATGCAGGTAACCAGGATCA
ACATTCAGCATTCAGAGTCTATTGGTGAGCATCCTTGCATCCCGAAGGACTCTTTTATCATTTGCTTTTCAGTTGTTCGGATGATCGGTCGTCTTGTCCC
GACATCCCTCTTTGTTTTAGAGGCTTCGTAGATAGTTAATAGCTCATATGTCTTTTATTTATCATTAATATGTTGTTTAAGATTTAAGTTGTCGTTTTGA
CAAAACTTTTTATCTATTTGAAGTTATGTTAAAGATAATGTGTCAAGTTAAGTTTTACGTTGTGTAAATAAGTTAGGCCACGGGTTCAGCCGCGGATAGC
AATGTCCTTCAAGTTTCAGCCACGTCCAAGATGTAGATTCGGGGAGTGACAAACTTAATATAAGAGAATAGAGTTTAAAAGTTCTAAGGAGTCTATGAAG
TCATGTCTGTAGAGTCCTAGTTATCTGTGTGAAGCGCGCCACATCTATAATTTTGAGGCTGCGATATTTAGGAACTATATCACTTCTTTCATATCATTTC
ATGTGTTAGAATTTAATACGTAAAAAGTTTCCCTCTTAATTCGTGCTTGTGTATATTTTCAGATTTATCATTCCTCCATGGAGTGTAGTCAGGGGTCATC
CAGCTAGGAGGAATGTGAAAAGCCAAAATTCCTAATGGCACAATGTGCAAACTCAGGAGAAGTCCAAATGTGTAATTCTTGAGGTTATAGGATGTTAATC
CAATTTAAATAATCGGTTAAAATCCTAAGGACCTCAAAAAAA
>LE_HBa0017I06_SP6_130559 (trimmed for quality and cloning vector)
CTTTATATTAGAGGTAAGTTATTCATGAGTTGAGCAGCCTTAAGGTAAGTGTTCCTTATTACCTTTATCAATTTTAAGTTATTGTTTAGCATTCCAATTC
GCATACTCGTACGTGCAATGTACTAATGTAAGTTGGCATGCATCGTCTGATGATGCAGATGCAGGTAACCAGGATCAACATTCAGCATTCAGAGTCTATT
GGTGAGCATCCTTGCATCCCGAAGGACTCTTTTATCATTTGCTTTTCAGTTGTTCGGATGATCGGTCGTCTTGTCCCGACATCCCTCTTTGTTTTAGAGG
CTTCGTAGATAGTTAATAGCTCATATGTCTTTTATTTATCATTAATATGTTGTTTAAGATTTAAGTTGTCGTTTTGACAAAACTTTTTATCTATTTGAAG
TTATGTTAAAGATAATGTGTCAAGTTAAGTTTTACGTTGTGTAAATAAGTTAGGCCACGGGTTCAGCCGCGGATAGCAATGTCCTTCAAGTTTCAGCCAC
GTCCAAGATGTAGATTCGGGGAGTGACAAACTTAATATAAGAGAATAGAGTTTAAAAGTTCTAAGGAGTCTATGAAGTCATGTCTGTAGAGTCCTAGTTA
TCTGTGTGAAGCGCGCCACATCTATAATTTTGAGGCTGCGATATTTAGGAACTATATCACTTCTTTCATATCATTTCATGTGTTA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.958393
Expected error %
0.3788
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38798.1| Score 80 E Value 4e-14 Identity 18.40% Align. Length 254bp (37.08%) Frame 1
hypothetical protein PGEC747E24.8 [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38795.1| Score 72 E Value 1e-11 Identity 18.00% Align. Length 254bp (37.08%) Frame 1
hypothetical protein PGEC747E24.3 [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0017I06
Clone
Clone name
hba-17i6
LE_HBa0017I06
P017I06
Clone type
BAC
Contamination
none
Estimated length
139,873
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found