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Clone Read LE_HBa0017H12_SP6_130523

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0017H12_SP6_130523
Primer
SP6
ID from Seq. Facility
LE_HBa_017_H12-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
584 trimmed for vector and quality, 970 raw
Genbank Accession
DU049735
Sequence
>LE_HBa0017H12_SP6_130523 (raw untrimmed)
ACCTTATTGAAAATCAAATACCGAGGTTAGGTCGGTTCAAGGATATAATCAAGAAAAGGGAATAGACTATGATGAGACTTCTGCACCTGTTGCCAGAATG
GAGGCTATTAGAATTTTAATAGCTTTTGTTGCATTCATAGGGTTCAAGCTGTATCGAATGGATGTGAAAATTGCATTTATATCTCAAAGAGGAGGTATTT
ATCAAACAACCTCCTGGTTTTGAAGATGCAGAGCTACCATATAATGTGTTCAAATTGAATAAGGCCATGTATGGTCTGAATCAGGATCCAAGAGCATGGT
ATGAAAGGCTGTCAAAGTTTCTGCTGAAGAATGGTTTCAAAAGAGGCAAGATAGACAATACTTTGTTCTTATTAAAAAGAGAGCAAGAATTGCTTATCAT
TCAAGTTTATGTGGATGACATAATCTTTGGAGCTACTTCAGAATATTTGTATGAAAAATTCTCATCATAGATAGGAAAGGAATTTGAAATGAGCATGATG
GGTGAACTGGCATTCTTCCTTGGTTTGCAAATCAAGAAATCATCAAATGGGATTTCAATCTGTCAGGAAAAGTACATTAAGGAGCTACTGAAGAAATTTA
ATATGTTTGACTCTAGACCTATTGATACTCCTATGGGAACAAATTCCAATCTTGGAGTAAAGGAATCTGATCCTCTTGTGAATCAGACTATGTACAGGGG
AATCATTGGATCCTTGTTATATCTGACTGCAAGCAGGCTTAATATTGTTTTATAGTGTTGGGATGTGTGCCATGTTACAGCCATGTCCCCAAGACCACAC
TTGAAGGCGGCAAAATGTATTTCTTAAATACTTGAATAAAACAAGGAACCTGGTTCTTTTCCATCAAGAAGGTGATACTTTCAATTATTGGGTTTTCCAA
TGCTCTTTTTCTGGTTATCAATTTGGAAGGAACAAGTCTCCCGAATAACTCTTTTTTTTAAATCCAACTC
>LE_HBa0017H12_SP6_130523 (trimmed for quality and cloning vector)
ATGAGACTTCTGCACCTGTTGCCAGAATGGAGGCTATTAGAATTTTAATAGCTTTTGTTGCATTCATAGGGTTCAAGCTGTATCGAATGGATGTGAAAAT
TGCATTTATATCTCAAAGAGGAGGTATTTATCAAACAACCTCCTGGTTTTGAAGATGCAGAGCTACCATATAATGTGTTCAAATTGAATAAGGCCATGTA
TGGTCTGAATCAGGATCCAAGAGCATGGTATGAAAGGCTGTCAAAGTTTCTGCTGAAGAATGGTTTCAAAAGAGGCAAGATAGACAATACTTTGTTCTTA
TTAAAAAGAGAGCAAGAATTGCTTATCATTCAAGTTTATGTGGATGACATAATCTTTGGAGCTACTTCAGAATATTTGTATGAAAAATTCTCATCATAGA
TAGGAAAGGAATTTGAAATGAGCATGATGGGTGAACTGGCATTCTTCCTTGGTTTGCAAATCAAGAAATCATCAAATGGGATTTCAATCTGTCAGGAAAA
GTACATTAAGGAGCTACTGAAGAAATTTAATATGTTTGACTCTAGACCTATTGATACTCCTATGGGAACAAATTCCAATCTTGG

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.938779
Expected error %
0.4605
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g23160.1 Score 100 E Value 2e-25 Identity 37.10% Align. Length 561bp (96.06%) Frame 1
68417.m03342 protein kinase family protein contains Pfam domain PF00069: Protein kinase domain
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_909107.1| Score 198 E Value 3e-59 Identity 60.50% Align. Length 579bp (99.14%) Frame 1
unnamed protein product [Oryza sativa (japonica cultivar-group)]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_912535.1| Score 197 E Value 3e-59 Identity 60.50% Align. Length 579bp (99.14%) Frame 1
Putative Zea mays retrotransposon Opie-2 [Oryza sativa (japonica cultivar-group)] gb|AAN60494.1| Putative Zea mays retrotransposon Opie-2 [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0017H12
Clone
Clone name
hba-17h12
LE_HBa0017H12
P017H12
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found