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Clone Read LE_HBa0017E02_SP6_130359

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0017E02_SP6_130359
Primer
SP6
ID from Seq. Facility
LE_HBa_017_E02-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
9 trimmed for vector and quality, 927 raw
Sequence
>LE_HBa0017E02_SP6_130359 (raw untrimmed)
TTCCAATTAAGATCCCGTTGCATGCTCCTCGCGAATTCGATTCCTTTGAACATAGCATTACACCCCCCTTTAATCTGCTGAAAATTTCAGGAGGATGAAT
GAAAACCCCCACATAATTACTTTTTTTGCATGCCGAGAAAGAAACAAAAGAAAGTGCACCCTATATATGTAAAGGACCCACTTCGATAGATATTGTAACC
GTGTTGACTAAAAATTCTAAATTGAAGGGACGAAGTGTTTAAATCATGAGCCTCAAAATTCGGATCTGCTTTGCAAATTTGATCCGTCGTGTCCTCTATG
TGTTGTTCACAAGAAAACCGAAGCCAAGTCGCTCAACGATGTCTCTCAAATGCAATTTCGCATCCAGTGTTGTTCCACATGCCGCGTCAGACAACAAACT
CCTTGTTTGTTCCATCAAAGTTTCAACCGGTCGAGCATACTTGTCAGCAACCTGTAAAACGTTCATTGACTGCGATTCGTAATAATTAATCCAATATAAT
GAACCGATCGAGAAAGATATTGTAACTACCTGATTGACAAGAGAGAATGAATGGAAACTATCACCCCAAACACTCGGAGAGAAATTTGCAACAGGGCGAA
CAATCTCATCTTGGTTGTTAAGTAGGGCCTTTTCTTCAGAGAAGGATGTAATTAGCTTTGTGAGAAAACAGAAAGCCTTTTTTTTTCTATATTTTCCTTT
CTCTCTATCGTTAGTTGAAGATAAGGGAATTGAAGTGTTGAGGGAAATGAAACTGAAGGAACATTTGGGAATTTATTGTGGCGCGAATGACTTCTTTTTT
TAAATTTTTTGGGGCTGCATGCGTCCCCTCCAGTTTCCTTTTTTCGATTCTCTTTTCTCTCTTCATCCCACGAATAATACACTCTTCCAGCGTTATCCAA
CTCACTGAAAACTTTTTCTCCATTCCC
>LE_HBa0017E02_SP6_130359 (trimmed for quality and cloning vector)
AGAAAGATA

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.9675
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0017E02
Clone
Clone name
hba-17e2
LE_HBa0017E02
P017E02
Clone type
BAC
Contamination
none
Estimated length
61,941
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found