Clone Read LE_HBa0015O20_SP6_130107

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0015O20_SP6_130107
Primer
SP6
ID from Seq. Facility
LE_HBa_015_O20-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
794 trimmed for vector and quality, 935 raw
Genbank Accession
DU051407
Sequence
>LE_HBa0015O20_SP6_130107 (raw untrimmed)
GGAAAGGATAGACTGGATTATAGTGTACCATAACATCAAAAAATACAGGTAGAAATATTTTTTCTTATTTGCTCAATGTTATCGGAATCTGAGTTGCAAG
TTACCCCAACACATCAACCCTTAATGTTTTCGAACACAATTTCTAAAGAAAATACTTAACTCAGTGATAGCATCATATACATTATTTGTCAAGACTCCGC
GAAATGCAAGAGGAAGCAATTGTTCCAACATAATATGAGAATCATGACTCTTCAGTCCATAAATTTTACGATCTTCTGACTTCACCCACCGTGATATATT
AGAAGAATAACCATTTGGAACCCTAATCATTTTGAAGAACTTGCATACTTTAGACTTCTCATCTGCTGATAAAGAATAACTTGTTGCCGGATAACAACAT
CTTCCATCCCTTTGAGTTGGATGCAACTCACTTCTTATACCCATTTCCTTCAAATCGTGGCGAGCATTCATTCAAATTATATTTTGTTTTTTCTTCAATG
TCTAATATTGTCCCAATGATATTATCGCACACATTTTTTTGCATCACATCTAAATTATGACGTATTAAATTATTTTTTCAATAAGGAAGCTTGAAAAAGA
TGTTTTTCTTCCTCCAGTTATGGATGCCTATACTTTTTTGTACTTTCGTTTTTTTCAGTCTTACCAAATTTCATATCCTCCAGAGTAAGCAATTGGTCTA
AAACATCCGTTCCAGAAAGAACTTCTGGAGCAGTTCTTCTTTCTACTTTTCCATCATAATCACGTTTGTTACTCCGCCACTTATGATTAGATGATAAAAA
TCTACGAGCACCCATATAAGAAAACTTACGACCATACCTTAATCGTGTAGATGGGGTGTCTTTGTTTCATAAAGGACAAGCCAAAGCTCCTTTTCTGCTC
CATCCAATAAATTGGCATAAGCGGAAAATCTTTAA
>LE_HBa0015O20_SP6_130107 (trimmed for quality and cloning vector)
GTGTACCATAACATCAAAAAATACAGGTAGAAATATTTTTTCTTATTTGCTCAATGTTATCGGAATCTGAGTTGCAAGTTACCCCAACACATCAACCCTT
AATGTTTTCGAACACAATTTCTAAAGAAAATACTTAACTCAGTGATAGCATCATATACATTATTTGTCAAGACTCCGCGAAATGCAAGAGGAAGCAATTG
TTCCAACATAATATGAGAATCATGACTCTTCAGTCCATAAATTTTACGATCTTCTGACTTCACCCACCGTGATATATTAGAAGAATAACCATTTGGAACC
CTAATCATTTTGAAGAACTTGCATACTTTAGACTTCTCATCTGCTGATAAAGAATAACTTGTTGCCGGATAACAACATCTTCCATCCCTTTGAGTTGGAT
GCAACTCACTTCTTATACCCATTTCCTTCAAATCGTGGCGAGCATTCATTCAAATTATATTTTGTTTTTTCTTCAATGTCTAATATTGTCCCAATGATAT
TATCGCACACATTTTTTTGCATCACATCTAAATTATGACGTATTAAATTATTTTTTCAATAAGGAAGCTTGAAAAAGATGTTTTTCTTCCTCCAGTTATG
GATGCCTATACTTTTTTGTACTTTCGTTTTTTTCAGTCTTACCAAATTTCATATCCTCCAGAGTAAGCAATTGGTCTAAAACATCCGTTCCAGAAAGAAC
TTCTGGAGCAGTTCTTCTTTCTACTTTTCCATCATAATCACGTTTGTTACTCCGCCACTTATGATTAGATGATAAAAATCTACGAGCACCCATA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.940637
Expected error %
0.2318
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAP53328.1| Score 120 E Value 1e-49 Identity 49.20% Align. Length 632bp (79.60%) Frame 2
putative TNP2-like transposon protein [Oryza sativa (japonica cultivar-group)] ref|NP_921041.1| putative TNP2-like transposon protein [Oryza sativa (japonica cultivar-group)] gb|AAM18727.1| putative TNP2-like transposon protein [Oryza sativa (japonica cultivar-group)]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAD40757.2| Score 112 E Value 5e-47 Identity 47.50% Align. Length 632bp (79.60%) Frame 2
OSJNBa0081G05.10 [Oryza sativa (japonica cultivar-group)] ref|XP_472113.1| OSJNBa0081G05.10 [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0015O20
Clone
Clone name
hba-15o20
LE_HBa0015O20
P015O20
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found