Clone Read LE_HBa0015L19_SP6_129961

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0015L19_SP6_129961
Primer
SP6
ID from Seq. Facility
LE_HBa_015_L19-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
766 trimmed for vector and quality, 949 raw
Genbank Accession
DU051269
Sequence
>LE_HBa0015L19_SP6_129961 (raw untrimmed)
ATTAATGTCTCGAATAGGATCGGAGGGCTTGTGAGAAGAGTTTCCAGGAGCTCAAAGCTAGACTCAATTCTGCCCCTGTGCTTACCTTGCCTAAGTGTGG
GTTGGTTTGGGTTGTGTTATTTTGCGGGTTGGTAAGGTGATAGCTTATGTGTCCAGACAGTCCAAGGTTCATAAGAAGAATTATCCCACTCATGACCTGG
AGTTGGCAGCTGCGGTGTTTGCACTAAAGTTGTGAGGCACTACTTGTATGGGGTGCATATGTACGTATTCACAGACCACAAGAGTCTTCAGTATGTGTTC
ACACAGAGAGAGTTGAATCTACGTCAGCGGAGATGGTTGGTTGTTGAAGGACTATGACATGAATGTCCACTATCATCCAGCTAAAGCTAATGTTGTAGCT
GGGTATTTGAGTAGGATGATCATTGGAAGTAGAACCCACGTTGAGGATCAGAAGAAGGATTGGTGAAAGATATACATAGACTTGCCAGACTGGGTGTACG
ATTGGTTGACTCTACTAGTGGGGGTGATTAAGTTCATCCTAGTTCTGAATCATCCTTAGTAGTTGAAGTCAAGGAGGGTCAGCGTCTTGATCCTATGTTG
AGGAGATGAAGGACTCAATAGTGGTTAATATGAATGAGTCTTTTGCTTTGGGAGATGAAGGCATACATAGGTACCAGGAAAGGCTGTGTGTACCAGATGT
GGATGATTTGCGGACGAGGATCATTGAGTGGCCCATGGTTCCTTATATTCCATACATCAAGGTTCCACCAAGATGTATCATGAACTTAAACACATCTATT
GGTGGGATGGCATAAAGAAGGACATTATATATTATGTGGCCAAGTGTTCCTATTTTCAATAAGTTAAGGTAAAAATCTTAAGCCTGGTGAATACTCAGAT
TTTGAGGTTCCACTGGAAAAGGGAAGCATTACATGGATTTTTGGTGGTC
>LE_HBa0015L19_SP6_129961 (trimmed for quality and cloning vector)
TTGTGAGAAGAGTTTCCAGGAGCTCAAAGCTAGACTCAATTCTGCCCCTGTGCTTACCTTGCCTAAGTGTGGGTTGGTTTGGGTTGTGTTATTTTGCGGG
TTGGTAAGGTGATAGCTTATGTGTCCAGACAGTCCAAGGTTCATAAGAAGAATTATCCCACTCATGACCTGGAGTTGGCAGCTGCGGTGTTTGCACTAAA
GTTGTGAGGCACTACTTGTATGGGGTGCATATGTACGTATTCACAGACCACAAGAGTCTTCAGTATGTGTTCACACAGAGAGAGTTGAATCTACGTCAGC
GGAGATGGTTGGTTGTTGAAGGACTATGACATGAATGTCCACTATCATCCAGCTAAAGCTAATGTTGTAGCTGGGTATTTGAGTAGGATGATCATTGGAA
GTAGAACCCACGTTGAGGATCAGAAGAAGGATTGGTGAAAGATATACATAGACTTGCCAGACTGGGTGTACGATTGGTTGACTCTACTAGTGGGGGTGAT
TAAGTTCATCCTAGTTCTGAATCATCCTTAGTAGTTGAAGTCAAGGAGGGTCAGCGTCTTGATCCTATGTTGAGGAGATGAAGGACTCAATAGTGGTTAA
TATGAATGAGTCTTTTGCTTTGGGAGATGAAGGCATACATAGGTACCAGGAAAGGCTGTGTGTACCAGATGTGGATGATTTGCGGACGAGGATCATTGAG
TGGCCCATGGTTCCTTATATTCCATACATCAAGGTTCCACCAAGATGTATCATGAACTTAAACACA

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.971413
Expected error %
0.1755
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38744.1| Score 110 E Value 1e-24 Identity 52.10% Align. Length 689bp (89.95%) Frame 2
putative gag-pol polyprotein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38724.1| Score 109 E Value 6e-24 Identity 53.60% Align. Length 689bp (89.95%) Frame 2
putative retrotransposon protein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0015L19
Clone
Clone name
hba-15l19
LE_HBa0015L19
P015L19
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found