Clone Read LE_HBa0014O17_T7_129334

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0014O17_T7_129334
Primer
T7
ID from Seq. Facility
LE_HBa_014_O17-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
718 trimmed for vector and quality, 885 raw
Genbank Accession
DU052611
Sequence
>LE_HBa0014O17_T7_129334 (raw untrimmed)
CCCGGTCCCGGGGGTTCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTCAGCAGATCAAGGAGATCATGGCAAGGTTTGTTATCCAAGAGCCTGCAAGCT
GGGGATGCTATTTTTGTGCATGTAGCCAGGGCAATATATTTGGCTGGAAGGGGAGTTGTACTTGGAGGAACTGGAAGACAAGGAAGAGAATTGGCTGAAG
CGGCTCTACGGCAGGTGGGAGTAGCTGTTCTAATTGACGAGATTGTGGATGCCACCTCTGTATTGGTTATGGCAGCACATGTGACGGTGAATGTTCATGG
TCCTTGGTATGCACAGTTAGTAGATAATATGTGAAGCTTTTTAACATTCTTTTGTAAATATCAGGGCATGTAGTTATTATTCTGTATTATCTAGCTGTGA
AACTCAGTCGAGTGTTGTTATTGTAGTAATGTGACTGGAAACCTAGAAAATGTAGATATTTGCTAAAATAAGAGTTAAATATAAACGCTTGCTTGTATAT
GCATGCTAAGTTTGAGAAATAATTTGAATGCTGATTGGATGAAAAAAAAGGTTGTACTGTGATGAACTGCTACGGCAGGAGTCTAATCCAGAAACACCTA
CTGTGATTAAATTGGTGTTATATATTCTTCCATAGCTTCCCGTGTTCTCACAGATGCTCCGAAGATAGCATTTTGAATGGTCCATTCACTCGACTTACCC
ATGTGTTCCCTTATCAACTAACAAAAACATCAGATGTTGTGACCTAATGAAGTTTGACTTTTCTCCCTGATTGGTTTTCCTTCGCTAAAGTTAGTGTAAA
AAGAAATCGAGGAATCAGCTTGCCTGCAAAAAAAGTTTCCCCTCCTGTCCCGCCTCCTTTAAACTTCTCCTTTCCCAAATACCCG
>LE_HBa0014O17_T7_129334 (trimmed for quality and cloning vector)
AGCTTCAGCAGATCAAGGAGATCATGGCAAGGTTTGTTATCCAAGAGCCTGCAAGCTGGGGATGCTATTTTTGTGCATGTAGCCAGGGCAATATATTTGG
CTGGAAGGGGAGTTGTACTTGGAGGAACTGGAAGACAAGGAAGAGAATTGGCTGAAGCGGCTCTACGGCAGGTGGGAGTAGCTGTTCTAATTGACGAGAT
TGTGGATGCCACCTCTGTATTGGTTATGGCAGCACATGTGACGGTGAATGTTCATGGTCCTTGGTATGCACAGTTAGTAGATAATATGTGAAGCTTTTTA
ACATTCTTTTGTAAATATCAGGGCATGTAGTTATTATTCTGTATTATCTAGCTGTGAAACTCAGTCGAGTGTTGTTATTGTAGTAATGTGACTGGAAACC
TAGAAAATGTAGATATTTGCTAAAATAAGAGTTAAATATAAACGCTTGCTTGTATATGCATGCTAAGTTTGAGAAATAATTTGAATGCTGATTGGATGAA
AAAAAAGGTTGTACTGTGATGAACTGCTACGGCAGGAGTCTAATCCAGAAACACCTACTGTGATTAAATTGGTGTTATATATTCTTCCATAGCTTCCCGT
GTTCTCACAGATGCTCCGAAGATAGCATTTTGAATGGTCCATTCACTCGACTTACCCATGTGTTCCCTTATCAACTAACAAAAACATCAGATGTTGTGAC
CTAATGAAGTTTGACTTT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.958605
Expected error %
0.5654
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g09150.1 Score 84 E Value 1e-16 Identity 15.40% Align. Length 245bp (34.12%) Frame 2
68417.m01515 T-complex protein 11 contains Pfam PF05794: T-complex protein 11
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g22930.1 Score 65 E Value 3e-11 Identity 12.10% Align. Length 263bp (36.63%) Frame 2
68414.m02866 T-complex protein 11 contains Pfam PF05794: T-complex protein 11
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|XP_466210.1| Score 85 E Value 2e-15 Identity 16.00% Align. Length 236bp (32.87%) Frame 2
putative T-complex protein 11 [Oryza sativa (japonica cultivar-group)] dbj|BAD15464.1| putative T-complex protein 11 [Oryza sativa (japonica cultivar-group)]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|XP_466211.1| Score 85 E Value 2e-15 Identity 16.00% Align. Length 236bp (32.87%) Frame 2
putative T-complex protein 11 [Oryza sativa (japonica cultivar-group)] dbj|BAD15465.1| putative T-complex protein 11 [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0014O17
Clone
Clone name
hba-14o17
LE_HBa0014O17
P014O17
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found