Clone Read LE_HBa0013D05_SP6_128013

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0013D05_SP6_128013
Primer
SP6
ID from Seq. Facility
LE_HBa_013_D05-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
591 trimmed for vector and quality, 890 raw
Genbank Accession
DU050272
Sequence
>LE_HBa0013D05_SP6_128013 (raw untrimmed)
TTTTCCTTTTTCCGCGGAAGAAGAGAAGATCTATCCCCCTTTTTGAAGTCAAGGATGTGGATCAAGTGTTGTTTGAGCAATGATTGGATGACAAACCTTT
AAACGATGGTTCGGTAGACTGGGAAGTGTTCAAAGATGCTTTTCTTGATAGGTTCTTTGCTTTATCGTAGATGGAGAAGAAGATGGTTGAATTCATGAAT
CTTTGTCATGGGGGAATGAGAGTGAAAGAGTACTCCCTCAACTTCACCCAACTCTCTAGGTATGTACCCCCCATGCTAGCCAGCCTAGAGCTATGATGAT
CAAATTTGTGATGAAAATGTCTTACTCGGTGGAAAAGGAGTGTCGTACGCAATGCTTCTTAAGGACTGGTTGTCTTTAGACGCATGGTGTATGCTCTTTA
AATAGAGGAGTCCTAAATTAAGGAGATAAGGCAAGAGGGGAAGACGCCTAGGTTTGTTGAATCTAGTCAAGAAAAACATAAAAGGAGGTTCTATCAGCAA
GAGTATTCCATGGGGAACAAGGATAGAGTTTCCAACCAAAATTCCCAAGATGGTGGCCATACTTTTGAGAGACCTAAGTGTACTACTTGTGGGAAGCAAC
ACATGGGTATGTATCTTGCCGGAACGGATGATTGCTTTGCATGTGGTAGAAAGACTAAAAAAATGAGGGACTACCCCAACATAAATTGCAAGGGGGAAAG
GGGTTCATAAAGCTTTCCTTATTTTCTATTGCTCCCAAAAAAACTTCCCTATGAAATTGGGGCTAGGGAAGGAGAATCTATCCCAAATTTGATAGTGTTG
GGTAAATTCTTAACTCTTTTAGGAATATTTTTTTTTTTGGGGTTAAAAAAAAAAATTTTATATTGGGTCTTTATACTTCCATTTTTTTCA
>LE_HBa0013D05_SP6_128013 (trimmed for quality and cloning vector)
AAGGATGTGGATCAAGTGTTGTTTGAGCAATGATTGGATGACAAACCTTTAAACGATGGTTCGGTAGACTGGGAAGTGTTCAAAGATGCTTTTCTTGATA
GGTTCTTTGCTTTATCGTAGATGGAGAAGAAGATGGTTGAATTCATGAATCTTTGTCATGGGGGAATGAGAGTGAAAGAGTACTCCCTCAACTTCACCCA
ACTCTCTAGGTATGTACCCCCCATGCTAGCCAGCCTAGAGCTATGATGATCAAATTTGTGATGAAAATGTCTTACTCGGTGGAAAAGGAGTGTCGTACGC
AATGCTTCTTAAGGACTGGTTGTCTTTAGACGCATGGTGTATGCTCTTTAAATAGAGGAGTCCTAAATTAAGGAGATAAGGCAAGAGGGGAAGACGCCTA
GGTTTGTTGAATCTAGTCAAGAAAAACATAAAAGGAGGTTCTATCAGCAAGAGTATTCCATGGGGAACAAGGATAGAGTTTCCAACCAAAATTCCCAAGA
TGGTGGCCATACTTTTGAGAGACCTAAGTGTACTACTTGTGGGAAGCAACACATGGGTATGTATCTTGCCGGAACGGATGATTGCTTTGCA

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.971688
Expected error %
0.6665
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38733.1| Score 103 E Value 4e-21 Identity 12.50% Align. Length 551bp (93.23%) Frame 2
putative retrotransposon gag protein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0013D05
Clone
Clone name
hba-13d5
LE_HBa0013D05
C02HBa0013D05
P013D05
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found