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Clone Read LE_HBa0167C01_SP6_12768

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0167C01_SP6_12768
Primer
SP6
ID from Seq. Facility
LE_HBa_167_C01-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 1572 raw
Sequence
>LE_HBa0167C01_SP6_12768 (raw untrimmed)
TACATCTGAGGCGATGAAAGCACTCACTCGGACGAGGNGTCGCGCCAACCGCACAGAGAGACTGAGACGACCTGCGCGGAACCGCAAGAGCAACAGCAGC
TATCCAGCACGCAGACATAGCAAACAGGAGCACCCTCACCTTAACGCACGATCACCACTGTTATAGAGGTAGGATTCAGCCGTATAGCTGCGCACGACGC
AGGTCGCCCTCTCAGGACGACACGGATCACTTTATGGGAGGGAGCGGAGAAGCGCCGTNCCATTCGGCCAGACGAACGACACACCACTAACATGCGCAGA
CCACGACCGCGAGACAGCTATGACAAATCTGTACACGACATGCCGTATGNCAGGCGCATATGTCTCTCTCTATAGACGGNGCTAGCGATGCTGTATCTCG
CGANGCACGGCGNACAACGAAGCTCTGATCGGACGCTGACTCCCGAACAGTGCGCGGCGAGTCACTGACGGCTTGATCAGAGGCGTAAACACAGAATGAG
GGAACGGAGTGACAAGGAAAGGGAGTGCGCGTTGGTAGGCACGCCTACTAAACACTTACAGAGGAGCATGTCTCGCGCATATGTGCGAGGCAACGAGCTT
ACGCAACCTGCACGACCGACTGCGTCATCTCGCTACCCCATGATGTCCACGACGCGTGCATCACCATGCGGTCCACCACTTTCTGCGCCGTCAACACATA
TGTACAATATATGTTAACATACCGTGCTAGTAACGACCGAGAGAGCATAAATGATGACGAAGAGATGATGAGCTTAAGNCAATCGTATCTGATCCACGCG
CGACGCACTGCGGAGACCGGCACGACAGCGAGCGACAGCTAACTCGCGCTATCTAAACATACAAACGGAACTGCATTGACCGTGCACAAATGCACTGACC
ACGATCGTAGCCGACACTGACCACAGACATATTATATCTTCATCANACATAACGCGATCACCTGAACTGCGGTATGATCGAATTAGAATATGACTAGTGT
GAAACGCATGCAGTGTGTCTGACGGACTCTAGTATGTGCGCGTGATCGTGACTTAGNTACTTGTCNGTATTTAGAACACCGACCCAGCGCTGGCAGCTGC
TCCCGTGGGTGACCGATAATCGAATACGCAGGGAACCACAGGACACTTAACGAACGGACTGCATTGTAGCGAGGGAAGGGGTGGAGACACTAAGACTTAC
CAAGTAGACGAGGGAGTGAGTGACGGTGTGTAGAGATGGGATGCGCAGTGTCACAGGAGTANCGTAATCGCTGCGCCTCTGACAGCTGCACGCGCCAGGA
GGATGGCATACGCTACGGCGATTACGCCGTCGGAGTGCACGACGCGTATCAGTANGTANATNGTGCANGTAGAGATCGTACACAACTGATGACTTGCGTA
TTAATACACGATAGAAGGATGTAGATATGATCGAGACAGTAGAGAATCTAACAGATGACACGTAGTAGACTACTTCAGTCTCGCGCACCTGGAATCCATG
TGGCAACTAACCACANAAGTGACAGCGACGACACANATCTGAGACCACGGGACTGTTNGACAGGAATGACCA
>LE_HBa0167C01_SP6_12768 (trimmed for quality and cloning vector)
AT

This is probably not a useful sequence.

Problems:
  • High predicted error rate
  • Low complexity
  • Short cloning insert
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
5.39716
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0167C01
Clone
Clone name
hba-167c1
LE_HBa0167C01
P167C01
Clone type
BAC
Contamination
none
Estimated length
120,226
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found