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Clone Read LE_HBa0184C04_SP6_125994

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0184C04_SP6_125994
Primer
SP6
ID from Seq. Facility
LE_HBa_184_C04-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
528 trimmed for vector and quality, 829 raw
Sequence
>LE_HBa0184C04_SP6_125994 (raw untrimmed)
TTTTGCTCTCCCAGGAGGCTTTTTCAGTGATTGTCTTCCAGCTTCCTTACTGTATAGACCAACAAATATGTACAAAGACCCCTTTAAAATGATATAACAC
CAAGCAGAACTATAAACGGGTGCTAATGTATCTCTAAATTGGGGCGGGGGACTCTAAACTCAAAAAATATCCCATAGGTGAATCCGTAACTTCCAAATTC
CAATTCAAGCGCTAGTTCAATAAAAAGTATTGGCTACATCTTATAATCTGGATGTACATAAAAGGATCAGGGAATAACTGAGCTACCATAAAAAAGAATG
CTTCCACTTCAAGAACGGTCATCGGATAAAACAAAACATAAATGTAAAAACTATAGTCGCTAGACAAACGTTGTACCACCTCATATGACCAACCAAACAT
TTCAACGATGAATTTTAATTCCTCTCCTACTCAAATGTGTAGTGAAATTACTCAATTACTATACATAGATATTCAAAACTTACTCTTTCCCATAAGAAGA
GAAGATCAGCATCCCTCTGGTTGACAACCTCCAATCGTGCAAAATCAATCTTGTTCGCCGGAAGATTCACGGTGGCAGGGTCAAATCCTTGGTACAAATA
AACTTTCTCAGGCTTGATTTCTTTGCTTCCATATTCCATAAACATGAGATCCAGCATTTATAAGTTGTTTGAGTTGGAAGTTCTTTCCTTTCCCTACCAA
GACAATATAGCATTCACATCCTACGATTATTAACAACTCAAAAACTATGGTTGCCCCAGACTCCTTCAATTATATCCCCCCCAAATGCGTCTCCGTATCC
CTCCCAAAAAAATGTGGCATTTTTTGGGA
>LE_HBa0184C04_SP6_125994 (trimmed for quality and cloning vector)
AAAATGATATAACACCAAGCAGAACTATAAACGGGTGCTAATGTATCTCTAAATTGGGGCGGGGGACTCTAAACTCAAAAAATATCCCATAGGTGAATCC
GTAACTTCCAAATTCCAATTCAAGCGCTAGTTCAATAAAAAGTATTGGCTACATCTTATAATCTGGATGTACATAAAAGGATCAGGGAATAACTGAGCTA
CCATAAAAAAGAATGCTTCCACTTCAAGAACGGTCATCGGATAAAACAAAACATAAATGTAAAAACTATAGTCGCTAGACAAACGTTGTACCACCTCATA
TGACCAACCAAACATTTCAACGATGAATTTTAATTCCTCTCCTACTCAAATGTGTAGTGAAATTACTCAATTACTATACATAGATATTCAAAACTTACTC
TTTCCCATAAGAAGAGAAGATCAGCATCCCTCTGGTTGACAACCTCCAATCGTGCAAAATCAATCTTGTTCGCCGGAAGATTCACGGTGGCAGGGTCAAA
TCCTTGGTACAAATAAACTTTCTCAGGC

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.95537
Expected error %
0.3074
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g62710.1 Score 64 E Value 4e-11 Identity 25.00% Align. Length 119bp (22.54%) Frame 1
68414.m07078 vacuolar processing enzyme beta / beta-VPE identical to SP|Q39044 Vacuolar processing enzyme, beta-isozyme precursor (EC 3.4.22.-) (Beta-VPE) {Arabidopsis thaliana}
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAB42651.2| Score 81 E Value 1e-14 Identity 29.50% Align. Length 128bp (24.24%) Frame 1
putative preprolegumain [Nicotiana tabacum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0184C04
Clone
Clone name
hba-184c4
LE_HBa0184C04
C08HBa0184C04
P184C04
Clone type
BAC
Contamination
none
Estimated length
114,367
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found