Clone Read LE_HBa0183L16_T7_125838

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0183L16_T7_125838
Primer
T7
ID from Seq. Facility
LE_HBa_183_L16-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
701 trimmed for vector and quality, 810 raw
Sequence
>LE_HBa0183L16_T7_125838 (raw untrimmed)
CCTCCGTACCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGGAGAGTGGGAAGAATCTCGGGCTGATAGCATTCGCGCTCTCGTTATCCGG
CCACAATATACTAAAGCTCTTTATCGAAAAGCTGCCTCAAGTATCAAGGTGACATGCCTTTAAATCATAATTGCTTCTTTTTACTTTTTCTGCAAAAATC
ATAAATTTGTTCGTATGCAATGCATTATAGCTGGAAAGATGGGCTGATGCTGTGAGCGATTATGAGTTTCTGCGGCAGCAACTTCCAAGTAACAAAGTGG
TTGCTGAAAATTTATCCTATGCCCGAGCTGAATTAAGGAAGTCACGCAGAAAAGGTAATTTCATGGTGAAGTTGGTTTCAGATCTTGACAAGTTCCGGGC
TGCGATTGCATCTGGTAGGCTTTCCTGCATCAGTCAGTATGTTAACCTCTTCCTTATATCATTTTCTATATAACTCAACAAATATTGTAGGTCCATCTGT
GGTCTATTTTGATGAATTATCCAACCCAGAAAGCACGTGGATGTCCTATATCATGGATACCTTGAACGCCGAATATCCTTCAGTAACTTTTCTCGAGGTA
AACAATCATAGGCAACGCGTCGTGCTTTTCAGGCAGACGGGAACACCTAGACTCTAAGCTGGAGTATTATATTTCTTACAATGCACAACAGGGGAATGAA
GAAAACTCATATTAATTTATTTTTTTTCTACTGAAGGGGGACGTGAAAAAAATTCCAGCGATCCCTTACAGCAAAAAAAATTAAAGTAGCACCCAAGGAT
TAACCTTTAC
>LE_HBa0183L16_T7_125838 (trimmed for quality and cloning vector)
AGCTTGGAGAGTGGGAAGAATCTCGGGCTGATAGCATTCGCGCTCTCGTTATCCGGCCACAATATACTAAAGCTCTTTATCGAAAAGCTGCCTCAAGTAT
CAAGGTGACATGCCTTTAAATCATAATTGCTTCTTTTTACTTTTTCTGCAAAAATCATAAATTTGTTCGTATGCAATGCATTATAGCTGGAAAGATGGGC
TGATGCTGTGAGCGATTATGAGTTTCTGCGGCAGCAACTTCCAAGTAACAAAGTGGTTGCTGAAAATTTATCCTATGCCCGAGCTGAATTAAGGAAGTCA
CGCAGAAAAGGTAATTTCATGGTGAAGTTGGTTTCAGATCTTGACAAGTTCCGGGCTGCGATTGCATCTGGTAGGCTTTCCTGCATCAGTCAGTATGTTA
ACCTCTTCCTTATATCATTTTCTATATAACTCAACAAATATTGTAGGTCCATCTGTGGTCTATTTTGATGAATTATCCAACCCAGAAAGCACGTGGATGT
CCTATATCATGGATACCTTGAACGCCGAATATCCTTCAGTAACTTTTCTCGAGGTAAACAATCATAGGCAACGCGTCGTGCTTTTCAGGCAGACGGGAAC
ACCTAGACTCTAAGCTGGAGTATTATATTTCTTACAATGCACAACAGGGGAATGAAGAAAACTCATATTAATTTATTTTTTTTCTACTGAAGGGGGACGT
G

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.979735
Expected error %
0.1442
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g14950.1 Score 55 E Value 1e-12 Identity 49.20% Align. Length 553bp (78.89%) Frame 1
68416.m01891 tetratricopeptide repeat (TPR)-containing protein low similarity to SP|Q99615 DnaJ homolog subfamily C member 7 (Tetratricopeptide repeat protein 2) {Homo sapiens}; contains Pfam profile PF00515: TPR Domain
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g42580.1 Score 54 E Value 9e-12 Identity 51.70% Align. Length 363bp (51.78%) Frame 1
68415.m05269 tetratricopeptide repeat (TPR)-containing protein contains Pfam profile PF00515 TPR Domain
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAA97058.1| Score 55 E Value 2e-13 Identity 44.80% Align. Length 553bp (78.89%) Frame 1
unnamed protein product [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_188113.1| Score 55 E Value 5e-11 Identity 49.20% Align. Length 553bp (78.89%) Frame 1
tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0183L16
Clone
Clone name
hba-183l16
LE_HBa0183L16
P183L16
Clone type
BAC
Contamination
none
Estimated length
17,479
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found