Clone Read LE_HBa0183G12_T7_125714

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0183G12_T7_125714
Primer
T7
ID from Seq. Facility
LE_HBa_183_G12-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
629 trimmed for vector and quality, 843 raw
Sequence
>LE_HBa0183G12_T7_125714 (raw untrimmed)
TTGGGACCCGGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTCACTGGTTCAAGTGTCACTGACGATCTGGAATACCTTGTTGAAGAGCTTCAG
AAGGTTTTCGAGCTTATGCATATTGCTGATGCTTAGAGAGTGGAACTAGCTTCACATACCACTTTTTATGCATAGAACACTTTGCTTCTCAACTGGGCTT
TGAAATTATTAAATTTCTGAGGCAAATTTCATTTTCTTTCAAAAAAAATCTCAACTCATGCGACTGCAATCATCACTAAGTAGTAGAAAATAACGACTCC
CACAAAAATATATACTATGCATAGATTCAAAAAAATCAGCGTAAATTAATTCAAAATGGTTTGAAGCTCTCCAAGACTTTCCAACAAGAAAATACTTACT
CATTTGTTTTCCGTAGATGCAACATTCACACAATTCAATGAAATCATTTTTTAGTAGTTCAAGAATCATGCCTTCATAAACTAGCAATTTTAGGCCCATT
ATGTCGAGATGTTCATACCTCAAATGTCACCGCTTCGACTCACCCTTTGAACTTTCAACAAGAGCAATTTTTTTTCATATTAGAAACGTACAGGGAAAAC
ATCTTGTTTGTGGTGATGGAGACTTTTTGTTTGTCATGACACAATTATCATAACCAAATCAAAGAGAATGTCCATCATTCATTATTTTTTGAACCCTCTA
TAATTTTTTTTTCCTAAATCACAATATAATTTAACCTTTATCTTATCTTTTTTTTATTGATGTGGCTTATTGTGGACTCCCACAATGGGTCTTTTTTTTT
TTAATCCTTTGTTTCTGGTTTTAATGGTTTGTCTATTTTGGCC
>LE_HBa0183G12_T7_125714 (trimmed for quality and cloning vector)
AGCTTCACTGGTTCAAGTGTCACTGACGATCTGGAATACCTTGTTGAAGAGCTTCAGAAGGTTTTCGAGCTTATGCATATTGCTGATGCTTAGAGAGTGG
AACTAGCTTCACATACCACTTTTTATGCATAGAACACTTTGCTTCTCAACTGGGCTTTGAAATTATTAAATTTCTGAGGCAAATTTCATTTTCTTTCAAA
AAAAATCTCAACTCATGCGACTGCAATCATCACTAAGTAGTAGAAAATAACGACTCCCACAAAAATATATACTATGCATAGATTCAAAAAAATCAGCGTA
AATTAATTCAAAATGGTTTGAAGCTCTCCAAGACTTTCCAACAAGAAAATACTTACTCATTTGTTTTCCGTAGATGCAACATTCACACAATTCAATGAAA
TCATTTTTTAGTAGTTCAAGAATCATGCCTTCATAAACTAGCAATTTTAGGCCCATTATGTCGAGATGTTCATACCTCAAATGTCACCGCTTCGACTCAC
CCTTTGAACTTTCAACAAGAGCAATTTTTTTTCATATTAGAAACGTACAGGGAAAACATCTTGTTTGTGGTGATGGAGACTTTTTGTTTGTCATGACACA
ATTATCATAACCAAATCAAAGAGAATGTC

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.946358
Expected error %
0.3818
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38758.1| Score 102 E Value 7e-21 Identity 15.50% Align. Length 398bp (63.28%) Frame 2
putative gag-pol polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0183G12
Clone
Clone name
hba-183g12
LE_HBa0183G12
P183G12
Clone type
BAC
Contamination
none
Estimated length
102,810
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found