Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

Clone Read LE_HBa0054N10_SP6_12546

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0054N10_SP6_12546
Primer
SP6
ID from Seq. Facility
LE_HBa_054_N10-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
3 trimmed for vector and quality, 1027 raw
Sequence
>LE_HBa0054N10_SP6_12546 (raw untrimmed)
GTACTCCAGACTACGTGTGAGCTGCCGAATATCATTTATCAGAGATATCCCTCCCTCTGTTAACTCATATACGCCANTCTCTCATCAGCATTACATGAGA
ATCTAANGAGAACACGCACAATATACCTACAGACATTCTCTAATGATGCTGATGACATACGATGTCATAGATACACATGATGTGTTACTGTCTTCTATGA
ATCCTAATCGAGACCCTCGTCGCGATGGTGTTACTCGATCCGGAGTATAGTCTAAGCTTCACACGCTGTTGACTACTTACAGCGAGAGACTAATGACGTG
CNGCAATCACATCCGCTTGTTTCATGCTGACNCTCACAGCTGCTCATGTCCTCATTGTGTTCTGTCTACGCGATAATGACTCTGAATACCTGATGAGTGC
CTTNCTGTGACGTATACGTGATGTACCAAACCTGACTGATCAGTTATCGCANTCACCACTCGCACATGTNATATGGCTCTGTACGTTCGATCTGCCTTAC
GCTNCTCGTGGATGTTATTCATGCACGCGAGTTCTCCACATGTGAGGGCAACAATGGATTCGAAAAAACTCTGAACTCCACTCCAACCTTTGGAGCATCG
TGCCCTCAGCTGAGCTACACGTCGTCTATCGTTATCACTTCGCACCATACTATTCCTACCATCTAACTAATTATATACACTACACTCATGACCGCTCTAT
ACATCTAATACACCACCTATGCTATGTGCTCCTGCGTCAACGACGCGCAGACGCCTCAACTCGACAGATATTCTTAGTATACCTCTCGATCTATAAACTT
CTGCTATATTGTTTAAATATCGTATCTACCTTGATGCTGTCGACNCCACATAATTATAGATAATTATGTTACTCAATATCTACTGACTAATTCTACACAC
TCAATGCACCAATTGCGTGTATCACTTCTTAACACATGATACATGTCTACAATCATCTTTGCGCCTGATCATAAACTCCTGCACTCTTCGCATCCCACAC
GGCCAAGCATCACTCTCCATGGTGCTC
>LE_HBa0054N10_SP6_12546 (trimmed for quality and cloning vector)
CTC

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
1.9431
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0054N10
Clone
Clone name
hba-54n10
LE_HBa0054N10
C03HBa0054N10
P054N10
Clone type
BAC
Contamination
none
Estimated length
100,608
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found