Clone Read LE_HBa0178A23_SP6_124813

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0178A23_SP6_124813
Primer
SP6
ID from Seq. Facility
LE_HBa_178_A23-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
1 trimmed for vector and quality, 1509 raw
Sequence
>LE_HBa0178A23_SP6_124813 (raw untrimmed)
CCACTTTCACTTNCACACACGGCAGTCTATTGCCATAGACGACGATAGCGTTTAGTCTAAGTCGGACAGAATCTGATAGCGACAATGGCTACAGTGAGAT
TATGGCAAAACCGACTANAGAGTGTCTCGCATNGNCTGGTTCTGAGCCCTGTTTCTAGGAGGGTGTGATAGTTCTCAGATCTATGAGAACCAATGCAGTC
AATGGGATAGAGAAGGACTCCATCTTTAGGAGGTGGAGAATACTCGTTGTAGAGCGGAGCACACGACTGTTTGGAGATATGGAATAGGATGATCTAGATA
TTCAACAGTTTAGAGAGCAGAATGGCCAACACACTGTAGCGCGTGCATATGCGATTCGCCCACGCTTAGAGCGCAACGCAGCTGCGGCATGACGCCAACA
CAAAGGAGGTCGGCGGGTGATGGGGAGTGCTATATATACATAACTAGATTCTTGTGAGGTAGAGGATGGGAATAGAAGACATTATCTCAGTTAAAAACAT
NTGTAGTGTGACGGTCTCAGGTATTAACGAAGGCTAACAATACCACTAATATATACAATTGTATCGTGGANATGTACGCTTACGTACGGAATAACGCTTC
ATCTTGTCTTCATCAGTCATGTAAGANCTACACGGCGGGTAGCAGCATACACGTGAATGATTATTATGGTAGCACAATAGTGGNGTGCCGGTAATCTATC
TTCGTGCATAGTGCGGAGATTACGGCGATATGAGTGTGGGAAATCCNCNGAGCTATTATGATAGAAGAGATGATATAGCAAGTGGACAACGAGGGGCGCT
GAATAGACCTCGTATACTCGGGAGGCGGGCGCGGGTGGTAACTAATAATACGAAAATNGAAATAACATATTTAACGCACTGGCGCAAGTAATTAAGAAGA
TCACCAGCCCGAAATACCGCTGGAGGAATGTTGGAGGTATGAGGGGTATCGGTCGTTGTACGCTCCGCTGGCCGTAGAAGAATCGGACCTTTCATCGCAA
GATNATGTGGCACGTGGTGGACATGGGAGTAGGTCCCGTACATGGTCGCCAGACTCGCGCTCACGCAAAGGGTAAGCTACAATATGTCGTCTATAAGATA
ATGATGAATGAGGGAAGTTGAGGGTACTAATATATCAGCGCGNCGGTAAACGCGCCGACAGGCTGAATGAGAAGGTGGAAAGGCAACATAGTACGTCCTG
AGATAATGTGCAACAGTCCTTGCTCTGAGAATGCCTCTCCTCTGCCACTCTGCGAAGTCTTACTCTGACTCACTGTGTTCCTCTTACACTTACTCCCTTG
CGACTCTGTCTAAGGTGGAGGAAGACTATGATGTNCTATTTGAGAGTAGAACGCCCGCTCCTTCTGCACGATTGACGATACATCTTGTGAATATGCGCCA
CCTAGCATATGTCTGCAGAGTACACGTTGATTGTGATTCGTAATNGTAGACAACACAACCATTATTTATATCTGTGTTAATATGCTTTAGCTTGGCGATG
ACATACCCN
>LE_HBa0178A23_SP6_124813 (trimmed for quality and cloning vector)
C

This is probably not a useful sequence.

Problems:
  • Low complexity
  • High predicted error rate
  • Short cloning insert
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
100
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0178A23
Clone
Clone name
hba-178a23
LE_HBa0178A23
C10HBa0178A23
P178A23
Clone type
BAC
Contamination
none
Estimated length
74,921
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found