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Clone Read LE_HBa0176P21_SP6_124787

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0176P21_SP6_124787
Primer
SP6
ID from Seq. Facility
LE_HBa_176_P21-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
433 trimmed for vector and quality, 990 raw
Sequence
>LE_HBa0176P21_SP6_124787 (raw untrimmed)
GGGGGCCCGCTTTTCTCAGCCTGCGACAGTTGGGAAGGTATTCACTATTTTGGTGTTATATACAGGCATAAAGCTGGCTTCCTCTTTTGTTTTATTTTTC
TTGTGGGATCAATACTTACTGTGGTTGCGGCACTTTCTTTTTCAGAATTTTGAGAAAATTACTAGTCGCGTGCAGAGCAAAAACAAGGATCAGGTGATAT
ATGGCAAGATGTATTTATTTATTTACTTATCCACATATCTTTTCTTCTACGCTTTTTGCTTCACTTATCTTTTTTTTTTTTTTGAACATATCTATTCCTT
TGATTTGGCAGGTCAGACATTATTATTATCGTCTAGTGAGGCGTATGAACAAGTTGTTGGGTCCAGAACTTTGTCTTGATGCCAAAAATTCCAAGGATAC
TAATGCTGCAATGTTGCGATGGTATGTGGTAGCCGTTATCTAGCCATTGATCTCTCTCACGGTTGTTTCAAACTGATGAAACCATTGGCTTGAAATTTTT
TTGTGCTATTTCCTTTACCCCCGCCATCCTCCTTTGGTCCCATTTTTATGGACATAGAAAGCGGGGTGGGCCCTAAAAGTAAAGGGATGGGGTTTCGTCG
CAACAAACTTAGCTTATTCACCCCGCGCCCTCCCTTTTGTACCTCTTTAACAGTTCTGTTCTTTTCCCTCGAAATTTTCCACTAAACTCACGCCTCCACC
TACCCCCCCACCTCACATTCCCCAAACCCCCCCACCTACCCCGCACCCGCAATCGAAACGAGCTACCAGTCACTACTCCCCCCGTCCCCCAACAACATTT
ATTAAAAATCTGGCAACCAACGCTCACATAAGTCCACCACATCACGTACTAACGCACAACCCTCAAACACAATCACTTAGACGTTTCACCCAGGACGTCC
TCCGCACGCCCCGCCGACGTTTCATTCCTTCACCCCACCCTCTCCACTCCGTCCTGCTCACACCCTCGCCCCTCCCCCTCCCCCCCCCCC
>LE_HBa0176P21_SP6_124787 (trimmed for quality and cloning vector)
AGTTGGGAAGGTATTCACTATTTTGGTGTTATATACAGGCATAAAGCTGGCTTCCTCTTTTGTTTTATTTTTCTTGTGGGATCAATACTTACTGTGGTTG
CGGCACTTTCTTTTTCAGAATTTTGAGAAAATTACTAGTCGCGTGCAGAGCAAAAACAAGGATCAGGTGATATATGGCAAGATGTATTTATTTATTTACT
TATCCACATATCTTTTCTTCTACGCTTTTTGCTTCACTTATCTTTTTTTTTTTTTTGAACATATCTATTCCTTTGATTTGGCAGGTCAGACATTATTATT
ATCGTCTAGTGAGGCGTATGAACAAGTTGTTGGGTCCAGAACTTTGTCTTGATGCCAAAAATTCCAAGGATACTAATGCTGCAATGTTGCGATGGTATGT
GGTAGCCGTTATCTAGCCATTGATCTCTCTCAC

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.941341
Expected error %
0.3275
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g36960.1 Score 77 E Value 2e-20 Identity 89.70% Align. Length 282bp (65.13%) Frame 3
68415.m04532 myb family transcription factor contains Pfam profile: PF00249 myb-like DNA-binding domain
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g36960.2 Score 77 E Value 2e-20 Identity 89.70% Align. Length 282bp (65.13%) Frame 3
68415.m04533 myb family transcription factor contains Pfam profile: PF00249 myb-like DNA-binding domain
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAM20017.1| Score 77 E Value 1e-18 Identity 89.70% Align. Length 282bp (65.13%) Frame 3
unknown protein [Arabidopsis thaliana] gb|AAL36424.1| unknown protein [Arabidopsis thaliana] ref|NP_850273.1| myb family transcription factor [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAM94622.1| Score 77 E Value 1e-18 Identity 89.70% Align. Length 282bp (65.13%) Frame 3
myb/SANT domain protein [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0176P21
Clone
Clone name
hba-176p21
LE_HBa0176P21
P176P21
Clone type
BAC
Contamination
none
Estimated length
34,311
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found