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Clone Read LE_HBa0176G01_SP6_124551

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0176G01_SP6_124551
Primer
SP6
ID from Seq. Facility
LE_HBa_176_G01-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 938 raw
Sequence
>LE_HBa0176G01_SP6_124551 (raw untrimmed)
CGCCGGGTTTTTCGATCCGCTTTGCCAATCATCTTGGATTACTGTGGAATATTGCATAAATATACAATATAGTCGATACCCCTTAAATGCCTCCGCAAAT
ACAAATAACAACAAAAACGACCCCTTTAATCAACGCCTNATTCAACTAAATAAGTTACGATTATATCTCAATTTACTTATTTGGAATAATACCAAAGAGC
ACAACAAAAATAAAACTACTAAACACAACGCCCAGACACGAAAGGAGAACGGATAATTGATGCAGTAAATAATACATACCACATTACCGCGGTATATAAC
ATAGTATAACGGCGCACTATCACAACAATTTTGCTTCGATGTTCCATACTTAAGCTATCTTTCTACCATCCTTAACTTTCTGATGCATTCTAAACTTATT
GCCGTTCTTCCTAATATACTTAATTTATACTCGTATCCCCTACCAATGTACTTACCCATCATCTCCCTCTTCCCTCTTCTCCTTCTACCTACACCACCAC
TCTACTCGAATCCTCCATCTCCACATCTCCCTCTCCTTGTTTNCGCCATTTTCTACTTCACTTCTCTACTTTCTCTCTCACCACTTTATCTTCTTGTTTA
CCTTGTATTTCCTTCTACTTCTTCTCTCTATACTTCCTCTCTCTCGTCTCTTATCTCCCTCCCATTCCTCCTTTTTTGTCTTTCCTCACATTTCTCACTC
TCTCTCCCCTCCTCATCCCCTTCCTTCCTCTAATCCCCCTCATATTTCCATCTCCCNCTTTCCTGTCCTTTTATGCTTTCTCCTCACCCGACCTATACCT
ACCATTCCAACCATATACCCATACACCCCTTTACCTCTATCTAATACTCAATCNCACTCTCTTCTTTCTTCTCTCTTCCTCCTTCTCCTCTCCTTCTTCT
CTTTCCTTCCTTTTCTTCTTCTTCTCTCCTTTCTTCCT
>LE_HBa0176G01_SP6_124551 (trimmed for quality and cloning vector)
TT

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.6924
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0176G01
Clone
Clone name
hba-176g1
LE_HBa0176G01
P176G01
Clone type
BAC
Contamination
none
Estimated length
74,689
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found