Clone Read LE_HBa0163M15_T7_123557

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0163M15_T7_123557
Primer
T7
ID from Seq. Facility
LE_HBa_163_M15-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
239 trimmed for vector and quality, 852 raw
Sequence
>LE_HBa0163M15_T7_123557 (raw untrimmed)
CCAAACCCGGGTCCCGGGGGGATCCTCTAGAGTCGACCTNGCAGGCTNGCAAGCTTNNGGAGTACTAGGAAGTCAAATACTTGGGAGAAATACCTTCGCA
GTGCAATCCACTCGCAACCTTGCCATGGATGAAATTTGTGAAGAGATGACTCAGATGAGAACTGAGCTTGGGTTGGTATTAAAACATGTCACTGGGGTGC
AGAAAAGATAAATGTAGTTAAATACTTGTCTAAACCACCAAATGATGAATGCTATTATGTTAAGAATTCTTATGCAGTAAATGAGAAGACGGGGGGTTTC
CGACCGAGTGCCCAAGGCTCAAATCATGAGAATTGGTTCCAAGGTCAATGAATTCAAGGTCTAATATATGGTAACTTTAATTTTGATGGTAATTAATCTT
ATATGTTAACTATATTTACTATAACTATATTAGCATCAAGAACAAATAAAATCTCTATATACATTAATGGAACCAGTACACTGTCACCCGACTCACCACT
CACTTCCTCGGCATGCTCCCAAACCAGCACTCAGCGTCGAATCTAGAAATCACTTCACCTTACTTTGATGTAAACATAACACATAAACACGAGCATCAGA
CTACCATAAACAGCATACTTGTCATAACAACGTAGCACCACGATAATTTTACAGCCTGAATTCAGCTAGTCAAATGTCACATCGAAGACAAGACACTAAC
TAGGACTAATCAACCCCCCACTCAACTATATTTCATGTAGATAAGATACTCCTTTGTATTATATTGAGATTTGTCCCCATATACCAGTGTTCAGCCAATT
GAATCAACGAAATAACTATGAGCACACTATGATTAGTATGACAGGTTTTCGT
>LE_HBa0163M15_T7_123557 (trimmed for quality and cloning vector)
GAGAAATACCTTCGCAGTGCAATCCACTCGCAACCTTGCCATGGATGAAATTTGTGAAGAGATGACTCAGATGAGAACTGAGCTTGGGTTGGTATTAAAA
CATGTCACTGGGGTGCAGAAAAGATAAATGTAGTTAAATACTTGTCTAAACCACCAAATGATGAATGCTATTATGTTAAGAATTCTTATGCAGTAAATGA
GAAGACGGGGGGTTTCCGACCGAGTGCCCAAGGCTCAAA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.970301
Expected error %
0.0641
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38730.1| Score 54 E Value 8e-13 Identity 52.10% Align. Length 205bp (85.77%) Frame 3
putative reverse transcriptase [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0163M15
Clone
Clone name
hba-163m15
LE_HBa0163M15
P163M15
Clone type
BAC
Contamination
none
Estimated length
117,005
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found