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Clone Read LE_HBa0163I07_T7_123453

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0163I07_T7_123453
Primer
T7
ID from Seq. Facility
LE_HBa_163_I07-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
553 trimmed for vector and quality, 932 raw
Sequence
>LE_HBa0163I07_T7_123453 (raw untrimmed)
TTTAACCTGGGTCCCGGGGGTACCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGCAACAGTGGTGTTTGCACCCTTGATCTGGAGACACTACTTGTATG
GTGTTCATGTAGATGTTTTCACTGACCATAGAAACCTTCAATATGTGTTCACTCAGAAAGAGTTGATCTTCGCTAGAAGAGATGGCTTGAGTTTCTTATT
GATTATGATATGAGTGTGAATTACCATCCTAGTAAGGAGAATGTAGTAGCAGATGTTTTGAGTACATTATTTATGGGTACTTTAGCCCATGTTGATGAGG
AAAGGAATGAACTAGTAAAGGATGTCACAGGCTTGCTCGCTTGGGAGTTTACCTTATGAGCATATCAGATAGTGATTTAACAGTTCAGAATGGGGTAGAA
TCTTCTTTAGTAGTGGAGGTTAAGCTAAATCAAGACAATGATCCAATCTTGCTTAAACTAAAGGGCGCATTCCACAATCAGAGAGTGGAGGTTTTCTCCC
AAGGGGAGATGGTGTACTTTGCTACCATGGTAGATTGTGTGTTTCTGATGTGGTTGATCTGAGACTACATATTCTTGTACAAGCCCATAATTCATGATTA
TTTTATACGTCTCTGTGACTCTGTGATGTACCGTGATTTAGAGGAAATCTATTTGGTGAATGGTAAGATAACGTCTTTCCTTATATTTACTGATTATTGT
TTACTTCTCTAGGATTTTTATCTATCATTTCACACCCTTCGTGAACGCCTGCCTGACTCCCTGTTAACCTTGTAACCCTAATCTTTATATACTTTAATGA
CGTATATTTGCTTTGATACCTCTCTGTACACAGACTTTTCTTATTGTTTGTATTTTCCCCTCTCCCTTTTTATTTCTCTTGTTTTTGCTTATCATTTGTT
TACGTTTTGGATATATTATTTTTTTTATTTAT
>LE_HBa0163I07_T7_123453 (trimmed for quality and cloning vector)
AGCTTGCAACAGTGGTGTTTGCACCCTTGATCTGGAGACACTACTTGTATGGTGTTCATGTAGATGTTTTCACTGACCATAGAAACCTTCAATATGTGTT
CACTCAGAAAGAGTTGATCTTCGCTAGAAGAGATGGCTTGAGTTTCTTATTGATTATGATATGAGTGTGAATTACCATCCTAGTAAGGAGAATGTAGTAG
CAGATGTTTTGAGTACATTATTTATGGGTACTTTAGCCCATGTTGATGAGGAAAGGAATGAACTAGTAAAGGATGTCACAGGCTTGCTCGCTTGGGAGTT
TACCTTATGAGCATATCAGATAGTGATTTAACAGTTCAGAATGGGGTAGAATCTTCTTTAGTAGTGGAGGTTAAGCTAAATCAAGACAATGATCCAATCT
TGCTTAAACTAAAGGGCGCATTCCACAATCAGAGAGTGGAGGTTTTCTCCCAAGGGGAGATGGTGTACTTTGCTACCATGGTAGATTGTGTGTTTCTGAT
GTGGTTGATCTGAGACTACATATTCTTGTACAAGCCCATAATTCATGATTATT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.951587
Expected error %
1.21
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38733.1| Score 75 E Value 5e-24 Identity 48.30% Align. Length 453bp (81.92%) Frame 1
putative retrotransposon gag protein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAV31171.1| Score 73 E Value 2e-20 Identity 64.60% Align. Length 542bp (98.01%) Frame 1
putative polyprotein [Solanum tuberosum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0163I07
Clone
Clone name
hba-163i7
LE_HBa0163I07
P163I07
Clone type
BAC
Contamination
none
Estimated length
62,527
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found