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Clone Read LE_HBa0163F04_T7_123378

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0163F04_T7_123378
Primer
T7
ID from Seq. Facility
LE_HBa_163_F04-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
747 trimmed for vector and quality, 901 raw
Sequence
>LE_HBa0163F04_T7_123378 (raw untrimmed)
CTCAGCTTGGTCCCGGGGGGACCTCTAGAGTCGACCTGCAGGCATGCAAGCTTAGGAACTAAGATAATGAATATTTTAAAGTGAGTTTCTGTAGCACGAA
ACATACCCTATAACAATTTTTGCAATGACCAGCTCAAACGCCTCGTGGAAGCAAGATTTTAGCCCATACTCATACTACAGAAAAAGTAGAATCCTCATCT
CTATCATAGTTTTATGGACATTAAATAAAAAGAAAAAGAATATCTTGCAATATCAGAATTTGATCTTGATACAGGGAGAAGAGTTATTACCCATATCCAC
AGAAAATATGTTATCTGGAATGCATTCTGCAAAGTTTGATAAGTGCAAAAAAAGAGTTTAGCCAAGGGAATATATAGATATGAAAAGCAAACTACTCCAT
GCACCATATTTGTGATTTGTCTTATGGAAACTATAGTACTTGCAAAGTTGAGCCCAAACGACTGGTTTACTAATAATACTTCTTTAAAATTCTGCAAATT
GGAAATGCAAACCTGAAACAAGGCAAAATGAATGAGGTGAAGAACCAGTCGTGGTCGACCAAACCAAAAATATTTGTCTGAGGCTTGTACAAGAGGGATT
CCTTGAACTACTGCATGTCTCTCTTTAATGTCAAGGGCCATCCTAGTCAAAACAGCTTGAAGCTTTGTTCCAACAGCTAAAATGATCTGAGAAGATTTCA
TTAATTAGAATTTCCCCATAAAGTAGTTTTCAGAAGATGAACAATGGAAAAGAATCTTACAATTAGAGGAATTAAGGATGCCCAGAACAATGCTTGTCAC
CCTGGAATGGGTCCAATAATTCAGAATATATGAAAAATTTTGTAGATGGGGACTAAACGAAGAACTAACAATTTCCGGAAATGGATAGACCTCAAACATA
C
>LE_HBa0163F04_T7_123378 (trimmed for quality and cloning vector)
AGCTTAGGAACTAAGATAATGAATATTTTAAAGTGAGTTTCTGTAGCACGAAACATACCCTATAACAATTTTTGCAATGACCAGCTCAAACGCCTCGTGG
AAGCAAGATTTTAGCCCATACTCATACTACAGAAAAAGTAGAATCCTCATCTCTATCATAGTTTTATGGACATTAAATAAAAAGAAAAAGAATATCTTGC
AATATCAGAATTTGATCTTGATACAGGGAGAAGAGTTATTACCCATATCCACAGAAAATATGTTATCTGGAATGCATTCTGCAAAGTTTGATAAGTGCAA
AAAAAGAGTTTAGCCAAGGGAATATATAGATATGAAAAGCAAACTACTCCATGCACCATATTTGTGATTTGTCTTATGGAAACTATAGTACTTGCAAAGT
TGAGCCCAAACGACTGGTTTACTAATAATACTTCTTTAAAATTCTGCAAATTGGAAATGCAAACCTGAAACAAGGCAAAATGAATGAGGTGAAGAACCAG
TCGTGGTCGACCAAACCAAAAATATTTGTCTGAGGCTTGTACAAGAGGGATTCCTTGAACTACTGCATGTCTCTCTTTAATGTCAAGGGCCATCCTAGTC
AAAACAGCTTGAAGCTTTGTTCCAACAGCTAAAATGATCTGAGAAGATTTCATTAATTAGAATTTCCCCATAAAGTAGTTTTCAGAAGATGAACAATGGA
AAAGAATCTTACAATTAGAGGAATTAAGGATGCCCAGAACAATGCTT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.945719
Expected error %
0.5457
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g17480.1 Score 104 E Value 5e-23 Identity 18.30% Align. Length 332bp (44.44%) Frame 1
68415.m02019 seven transmembrane MLO family protein / MLO-like protein 8 (MLO8) identical to membrane protein Mlo8 [Arabidopsis thaliana] gi|14091586|gb|AAK53801; similar to MLO protein SWISS-PROT:P93766, NCBI_gi:1877221 [Hordeum vulgare][Barley]
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g65970.1 Score 103 E Value 1e-23 Identity 56.80% Align. Length 439bp (58.77%) Frame 1
68418.m08305 seven transmembrane MLO family protein / MLO-like protein 10 (MLO10) identical to membrane protein Mlo10 [Arabidopsis thaliana] gi|14091590|gb|AAK53803; similar to MLO protein SWISS-PROT:P93766, NCBI_gi:1877221 [Hordeum vulgare][Barley]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAO42350.1| Score 104 E Value 2e-21 Identity 18.30% Align. Length 332bp (44.44%) Frame 1
putative Mlo protein [Arabidopsis thaliana] gb|AAK53801.1| membrane protein Mlo8 [Arabidopsis thaliana] gb|AAO22734.1| putative Mlo protein [Arabidopsis thaliana] gb|AAD32905.2| similar to Mlo proteins from H. vulgare [Arabidopsis thaliana] ref|NP_565416.1| seven transmembrane MLO family protein / MLO-like protein 8 (MLO8) [Arabidopsis thaliana] sp|O22757|MLO8_ARATH MLO-like protein 8 (AtMlo8)
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAB10402.1| Score 103 E Value 7e-22 Identity 56.80% Align. Length 439bp (58.77%) Frame 1
Mlo protein-like [Arabidopsis thaliana] gb|AAK53803.1| membrane protein Mlo10 [Arabidopsis thaliana] ref|NP_201398.1| seven transmembrane MLO family protein / MLO-like protein 10 (MLO10) [Arabidopsis thaliana] sp|Q9FKY5|ML10_ARATH MLO-like protein 10 (AtMlo10)
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0163F04
Clone
Clone name
hba-163f4
LE_HBa0163F04
P163F04
Clone type
BAC
Contamination
none
Estimated length
107,823
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found