Clone Read LE_HBa0151K03_SP6_123113

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0151K03_SP6_123113
Primer
SP6
ID from Seq. Facility
LE_HBa_151_K03-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
571 trimmed for vector and quality, 956 raw
Genbank Accession
DU054013
Sequence
>LE_HBa0151K03_SP6_123113 (raw untrimmed)
CCCCGGTTTATCCTACGCATATGGTCATTATGAGTTTTGGTCATGTCCTTTGACTTGACTAATGCACTAGCCGCCTTCTTGAACCTCATGAATATAGTCT
TCAAATCTATTTTAGATATGATTAGCAAAATATGTGCTTGCAAACCTAGGAATCAGACTAATGGATTCAACAAAAGGAGGAATATTGGTGATAAATGGGG
CCGAGTCATCATTAGTGTCAGAAGTAAAAAGCAAGGCAGATCAAGTTCATATTTTGCTTGAATTGAAGGCAAATATTTATAAGAAAAAAGTATTAGCTTT
TGAACAAGGGGGAGACGTTGTCTTGAGATACCATGGAATATTGTGTGTATCAATGGTGGATGGATTCTTAAAGAGAATCATGGAAGAAGATCATAACTCT
AGATATTCCATTCGTCCGGGTTTCGCTAAGATGTATCGTGATTTGAGAGAAATCTATTGGTGGAATGGTAAGAAGAAGGGCATTGCAGAATTTATTTCCA
AGTGACCGAATTGCGAACAAGTTAAAGTGGAGCACAAAAGGCCCGATATTTTGGCTCAAACTATTGAAATTTTGGAATGGAAGTTGGAGATGATTAATAT
GGATTTTAACTCACTTGTTGACAATGTATTGTAGGCAAAATGATTTTCAATTTTGGGTAGTTGTTCGATACTATGACAGCGTCAGCCTATTTTTTGGCAC
TAAATGACTACAAAATCAGCGAAAATTATTTGCTTGTTATTAATCAGGAGGTGAGAACATTTTATGGAGTCTGACTCTTTTTTTTTATGATTAAAATTTA
CTTTTATTTATTTTATCTAGAAATCTTTTTTGGGCGGTGGGTTTATAAATTTGATCCCTATTGTTCCACGTTTTCTCAATTTTGTATATACAAGTACCTT
ATTGATGTTAACAAATGTTTGTTTAAACTGAGATCAATCTACATACTCACTATTCT
>LE_HBa0151K03_SP6_123113 (trimmed for quality and cloning vector)
GTCATTATGAGTTTTGGTCATGTCCTTTGACTTGACTAATGCACTAGCCGCCTTCTTGAACCTCATGAATATAGTCTTCAAATCTATTTTAGATATGATT
AGCAAAATATGTGCTTGCAAACCTAGGAATCAGACTAATGGATTCAACAAAAGGAGGAATATTGGTGATAAATGGGGCCGAGTCATCATTAGTGTCAGAA
GTAAAAAGCAAGGCAGATCAAGTTCATATTTTGCTTGAATTGAAGGCAAATATTTATAAGAAAAAAGTATTAGCTTTTGAACAAGGGGGAGACGTTGTCT
TGAGATACCATGGAATATTGTGTGTATCAATGGTGGATGGATTCTTAAAGAGAATCATGGAAGAAGATCATAACTCTAGATATTCCATTCGTCCGGGTTT
CGCTAAGATGTATCGTGATTTGAGAGAAATCTATTGGTGGAATGGTAAGAAGAAGGGCATTGCAGAATTTATTTCCAAGTGACCGAATTGCGAACAAGTT
AAAGTGGAGCACAAAAGGCCCGATATTTTGGCTCAAACTATTGAAATTTTGGAATGGAAGTTGGAGATGAT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.952501
Expected error %
0.2121
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38744.1| Score 217 E Value 2e-55 Identity 23.50% Align. Length 455bp (79.68%) Frame 1
putative gag-pol polyprotein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38724.1| Score 217 E Value 2e-55 Identity 23.50% Align. Length 455bp (79.68%) Frame 1
putative retrotransposon protein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0151K03
Clone
Clone name
hba-151k3
LE_HBa0151K03
P151K03
Clone type
BAC
Contamination
none
Estimated length
116,233
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found