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Clone Read LE_HBa0151C18_SP6_122936

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0151C18_SP6_122936
Primer
SP6
ID from Seq. Facility
LE_HBa_151_C18-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
524 trimmed for vector and quality, 964 raw
Genbank Accession
DU053882
Sequence
>LE_HBa0151C18_SP6_122936 (raw untrimmed)
CCCGACATTATTGAAGCTGGGCACCTTTTTAAAGAGATTTTCCTTTATGCACCAGTAGTTTTGTAGAATATGATATATTGGCTGATGCAATTCTTAGTGC
TTACTATTCAAACTCTGACAAGTATAAGATGTTCATTTTCGTTAAATCATCCGTGTTATATTTCCGAGGACAAAAATGTAGTGGCTATTGATTGATCTGA
GTCATTATTATTTAGCATATTCTTGCAGTGAATTCTGGTGTATATTGATCCAAAAGTTTTCATTCCTTATTTCTTGGGTGACCAGGTGCGCGTTCAATCT
GATCCTGCTGGCCGTCTGGTCATAACTGGTCAGCCGGAACAACTTGACAACCCTTGGGGTATTACCGCCTTCAAAAAGGTAAGTTTGGTTATTTTATTGA
TCTATTTCAATATGAATTCTCGTTCTACAACTATCGTGATTTTGCATCATCTGTGCCTTTCTGCTGGAAGTTTTAAAGACTGATGATATCTAAGGAAAAG
AGAAACTAGTGCGTGTTTGTGCCAAGAATACAGAAAAAAAGTTCTTTGTTGAAGTTCCTCCATTATTATTTCTCGCAAATGGAGGCTACTTTTTTTCAAA
ATAGGAGAGCTATTTACATTTTTTAGAAAACGTATATTCATTTAACTGCTGTTCCACTTTAAAATCGGCTTGCCCACCTCTGTTTTATGTACTAGTTCTC
TCTCCTTTCACTTTCACCCTCCCTTCCCTCCCTCTCGCCAAAATTTATGAATTCTCNCTGAACCCGGCTTGCTCTTGACTGTTGGGGTCTCCTGCTTTTT
TATGCGCTGTGTCATTTATCTTCAATATACTCGTCTGTCTGTTTATTTTCTCATCCTTTACGCGATACTCATGAACTTCGTGTATACTGCGCGAGACACC
TTCAGCTGGCATCAATGCTTATACATGTCCTCGTGTATCGTCCCTCATCCTGTACACGCTATTT
>LE_HBa0151C18_SP6_122936 (trimmed for quality and cloning vector)
CTTTTTAAAGAGATTTTCCTTTATGCACCAGTAGTTTTGTAGAATATGATATATTGGCTGATGCAATTCTTAGTGCTTACTATTCAAACTCTGACAAGTA
TAAGATGTTCATTTTCGTTAAATCATCCGTGTTATATTTCCGAGGACAAAAATGTAGTGGCTATTGATTGATCTGAGTCATTATTATTTAGCATATTCTT
GCAGTGAATTCTGGTGTATATTGATCCAAAAGTTTTCATTCCTTATTTCTTGGGTGACCAGGTGCGCGTTCAATCTGATCCTGCTGGCCGTCTGGTCATA
ACTGGTCAGCCGGAACAACTTGACAACCCTTGGGGTATTACCGCCTTCAAAAAGGTAAGTTTGGTTATTTTATTGATCTATTTCAATATGAATTCTCGTT
CTACAACTATCGTGATTTTGCATCATCTGTGCCTTTCTGCTGGAAGTTTTAAAGACTGATGATATCTAAGGAAAAGAGAAACTAGTGCGTGTTTGTGCCA
AGAATACAGAAAAAAAGTTCTTTG

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.957161
Expected error %
0.3435
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g76510.2 Score 70 E Value 5e-13 Identity 26.70% Align. Length 119bp (22.71%) Frame 2
68414.m08903 ARID/BRIGHT DNA-binding domain-containing protein contains Pfam profile PF01388: ARID/BRIGHT DNA binding domain
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g76510.1 Score 70 E Value 5e-13 Identity 26.70% Align. Length 119bp (22.71%) Frame 2
68414.m08902 ARID/BRIGHT DNA-binding domain-containing protein contains Pfam profile PF01388: ARID/BRIGHT DNA binding domain
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_177777.3| Score 70 E Value 2e-11 Identity 26.70% Align. Length 119bp (22.71%) Frame 2
ARID/BRIGHT DNA-binding domain-containing protein [Arabidopsis thaliana] ref|NP_974156.1| ARID/BRIGHT DNA-binding domain-containing protein [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAG51952.1| Score 70 E Value 2e-11 Identity 26.70% Align. Length 119bp (22.71%) Frame 2
putative DNA-binding protein; 48797-45229 [Arabidopsis thaliana] pir||A96793 probable DNA-binding protein, 48797-45229 [imported] - Arabidopsis thaliana
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0151C18
Clone
Clone name
hba-151c18
LE_HBa0151C18
P151C18
Clone type
BAC
Contamination
none
Estimated length
106,327
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found